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While running cellbender on a large dataset, I kept running into problems similar to what's described in #343 and #190 .
I boiled it down to the fact that this condition was never met because my dataset is very big. I realized in practice max_total_droplets is hardcoded to 70000 (in the get_priors function signature, max_total_droplets has a default of const.MAX_TOTAL_DROPLETS_GUESSED, which is set to 70000here)
While running
cellbender
on a large dataset, I kept running into problems similar to what's described in #343 and #190 .I boiled it down to the fact that this condition was never met because my dataset is very big. I realized in practice
max_total_droplets
is hardcoded to70000
(in theget_priors
function signature,max_total_droplets
has a default ofconst.MAX_TOTAL_DROPLETS_GUESSED
, which is set to70000
here)Another user described having issues with a big dataset too, which I would guess is a similar situation to mine.
I'll open a PR shortly to try and address this
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