rna-seq.yml

name: rna-seq
channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
- bioconda::fastqc==0.11.9
- bioconda::star==2.7.10b
- bioconda::samtools==1.16.1
- bioconda::subread==2.0.3
- bioconda::multiqc==1.17
- conda-forge::ipykernel==6.29.0
- conda-forge::r-irkernel==1.3.2
- conda-forge::r-ggplot2==3.4.4
- conda-forge::r-gplots==3.1.3
- conda-forge::r-data.table==1.14.10
- conda-forge::r-readr==2.1.5
- bioconda::bioconductor-limma==3.58.1
- bioconda::bioconductor-glimma==2.12.0
- bioconda::bioconductor-deseq2==1.42.0
- conda-forge::r-rcolorbrewer==1.1_3
- bioconda::bioconductor-apeglm==1.24.0
- bioconda::bioconductor-affycoretools==1.74.0
- bioconda::bioconductor-biomart==2.58.0
- bioconda::bioconductor-edger==4.0.2
- bioconda::bioconductor-tximport==1.30.0
- bioconda::bioconductor-tximportdata==1.30.0
- bioconda::bioconductor-tximeta==1.20.1