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Error while reading AGE output #123

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jasjitbanwait opened this issue Oct 2, 2017 · 3 comments
Open

Error while reading AGE output #123

jasjitbanwait opened this issue Oct 2, 2017 · 3 comments

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@jasjitbanwait
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Hi,
I am using Meta-SV version 0.5.4. I got an error while reading the Age output. I am attaching the error file here.
It would be great if you can look into it!
Thanks,

MetaSVJob60.9283228.stdout.txt

@marghoob
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marghoob commented Oct 2, 2017

Thanks for using MetaSV, @jasjitbanwait. What version of AGE are you using? For MetaSV 0.5.4, please use AGE compiled from https://github.com/abyzovlab/AGE

@jasjitbanwait
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I used the version of AGE that is part of Bioconda : https://github.com/marghoob/AGE/tree/simple-parseable-output
The commits there indicate that it has fixes for MetaSV. Would this version work with MetaSV 0.5.4 or I have to switch the AGE to the one you specified?

@marghoob
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marghoob commented Oct 2, 2017

You should definitely switch to the AGE version I specified on abyzovlab.

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