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Release Gnocchi Version 0.1.0 #24

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tkdagdelen opened this issue Mar 6, 2017 · 0 comments

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tkdagdelen commented Mar 6, 2017 •

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Release of Gnocchi with basic functionality. This includes:

linear regression
logistic reg
MAF
mind
geno
phenotype loading with and without covariates
all of the above with incremental model saving, loading, and updating

Todo:

Cleanup #25

Strip functionality that will not be in 0.1.0
Clean out unnecessary comments etc.
Add documentation
Add thorough readme

Testing #26

Review of all test suites and addition of additional rigorous unit tests as needed
End-to-end test on reputable data

Dependency/Build Cleanup #27

Update Spark and ADAM

Code Review and Improvement

Code Review of all code (readability, conciseness, run-time)
Run-time optimization (changing for's in run-time critical code to while, as well as refactoring if necessary)

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