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LoadGenotypes does not detect existing ADAM Parquet files #23

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p-yang opened this issue Mar 6, 2017 · 0 comments
Open

LoadGenotypes does not detect existing ADAM Parquet files #23

p-yang opened this issue Mar 6, 2017 · 0 comments
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p-yang commented Mar 6, 2017

If you re-run Gnocchi in the same parent folder for the results destination, it will not detect that there is an existing VCF2ADAM conversion in the folder, and it will attempt to create a new file at the same location, and throw an exception. Likewise, the -overwriteParquet flag does not work either. This is most likely due to using java.io.File, as it does not interface with HDFS files at all.
adgirish pushed a commit to adgirish/gnocchi that referenced this issue Oct 16, 2017
@nathanielparke
Move to a more generic structure for models package (bigdatagenomics#23)
1637917 
* models refactor

* refactor models

* generics for linear

* concordance with new models

* fix test suite
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