submission_on_docker.yml

name: Docker Image CI

on:
    push:
      branches: [ "main","multi_phase_tasks" ]
    pull_request:
      branches: [ "main","multi_phase_tasks" ]


jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        # r-version: ['3.6.3', '4.1.1']
        r-version: ['4.1.1']
        
  


    steps:
      - uses: actions/checkout@v4

      - name: Set up R ${{ matrix.r-version }}
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r-version }}
          
      - name: Check Data Generation
        run: |
          chmod +x generate_data.sh
          sh generate_data.sh
          # mkdir input_data
          # mkdir ground_truth
          # mkdir data
          # # ls -rthl *
          # Rscript generate_fake_data.R
          # # ls -rthl *
          # cp data/mixes_data.rds starting_kit/mixes_data.rds
          # cp data/reference_data.rds starting_kit/reference_data.rds

          # cp data/mixes_data.rds input_data/mixes_data.rds
          # cp data/reference_data.rds input_data/reference_data.rds

          # cp data/ground_truth.rds ground_truth/ground_truth.rds
          # # ls -rthl *
         

      # - name: Build the Docker image
      #   run: |
      #     cd docker/codabench_hadaca3_light
      #     docker build -t hombergn/hadaca3_light .
      #     cd -
      
      - name: Create submission program
        run: |
          cd starting_kit/
          Rscript submission_script.R
          cd ..

      - name: Prepare files by creating folder etc...
        shell: bash
        run: |
          chmod +x prepare2score_locally.sh
          sh prepare2score_locally.sh
          ls test_output/*

      - name: Running ingestion Program
        run: |
          # ls -rthl *
          docker run --rm  -v $PWD/ingestion_program:/app/program  -v $PWD/test_output/res:/app/output  -v $PWD/starting_kit/submissions:/app/ingested_program  -w /app/program  -v $PWD/input_data/:/app/input_data/ hombergn/hadaca3_light Rscript /app/program/ingestion.R /app/program /app/input_data /app/output /app/ingested_program 
          # ls -rthl test_output/*
        
      - name: Running Scoring Program
        run: |
          docker run --rm  -v $PWD/scoring_program:/app/program  -v $PWD/test_output:/app/output  -w /app/program  -v $PWD/test_output:/app/input  hombergn/hadaca3_light  Rscript /app/program/scoring.R /app/input /app/output /app/program
          # ls -rthl test_output/*
        

      # - name: Install dependencies
      #   shell: Rscript {0} 
      #   run: |
      #     install.packages(c("remotes", "rcmdcheck"))
      #     remotes::install_deps(dependencies = TRUE)

      # - name: Check Rsript
      #   shell: Rscript {0} 
      #   run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")ll