feature_parse_specs.yaml

SARS-CoV-2: &SARS-CoV-2_parse_specs
  query_clip5: 4
  query_clip3: 4
  termini5:
    filter:
      clip5: 4
      mutation_nt_count: 1
      mutation_op_count: null
  gene:
    filter:
      mutation_nt_count: 45
      mutation_op_count: null
    return: [mutations, accuracy]
  spacer:
    filter:
      mutation_nt_count: 1
      mutation_op_count: null
  barcode:
    filter:
      mutation_nt_count: 0
      mutation_op_count: null
    return: [sequence, accuracy]
  termini3:
    filter:
      clip3: 4
      mutation_nt_count: 1
      mutation_op_count: null

BM48-31: *SARS-CoV-2_parse_specs
GD-Pangolin: *SARS-CoV-2_parse_specs
HKU3-1: *SARS-CoV-2_parse_specs
LYRa11: *SARS-CoV-2_parse_specs
RaTG13: *SARS-CoV-2_parse_specs
Rf1: *SARS-CoV-2_parse_specs
Rp3: *SARS-CoV-2_parse_specs
SARS-CoV: *SARS-CoV-2_parse_specs
WIV16: *SARS-CoV-2_parse_specs
ZC45: *SARS-CoV-2_parse_specs
ZXC21: *SARS-CoV-2_parse_specs