mamba

[portbo]

Is your feature request related to a problem? Please describe.
I am trying to run varCA in mamba instead of conda

Describe the solution you'd like
In the run.bash there is a --use-conda flag. Is there a way to run the entire pipeline using mamba instead of conda? I am able to install snakemake using mamba but when I execute run.bash it still tries to run the piepeline using conda and this fails.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.