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can't get dyn.tl.moments to work #699

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paupaiz opened this issue Aug 8, 2024 · 1 comment
Open
3 tasks done

can't get dyn.tl.moments to work #699

paupaiz opened this issue Aug 8, 2024 · 1 comment
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bug Something isn't working

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@paupaiz
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paupaiz commented Aug 8, 2024

  • I am sure this issue is not simply a general python programming problem
    (if so, please google the answers).
  • I have searched github issues and confirm this issue has not reported previously.
  • I have confirmed this bug is not related to dynamo version and it exists on the latest version of dynamo.

dyn.tl.moments(adata, group="time")

error:

ValueError Traceback (most recent call last)
/home/paulina/dynamo/dynamo.ipynb Cell 32 line 1
----> 1 dyn.tl.moments(adata, group="time")

File /miniconda3/lib/python3.12/site-packages/dynamo/tools/moments.py:167, in moments(adata, X_data, genes, group, conn, use_gaussian_kernel, normalize, use_mnn, layers, n_pca_components, n_neighbors, copy)
164 cur_conn = normalize_knn_graph(cur_kNN > 0)
166 cur_cells_ = np.where(cur_cells)[0]
--> <a href='
/miniconda3/lib/python3.12/s

@paupaiz paupaiz added the bug Something isn't working label Aug 8, 2024
@Sichao25
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Hi, thanks for reporting this bug. Could you please share the full traceback error information?

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