Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Investigate/add examples of datasets in ZARR format to the scivision catalog #599

Open
acocac opened this issue Aug 8, 2023 · 3 comments

Comments

@acocac
Copy link
Member

acocac commented Aug 8, 2023

Zarr is a relatively new cloud-based data format specifically for improving access to N-Dimensional arrays.

Zarr is unique because it is an implementation of a chunked storage library for data that supports parallel reads, parallel writes, and easily plugs into different storage systems like cloud object stores.

It'd be interesting to check some benchmark datasets across domains in this format and incorporate them in the Scivision catalog.

Some references:

@acocac acocac self-assigned this Aug 8, 2023
@quantumjot
Copy link
Collaborator

I started setting up a zarr dataset in this repo, but didn't have a good place to host the data (other than github):
https://github.com/lowe-lab-ucl/cell-cycle-scivision

@acocac
Copy link
Member Author

acocac commented Aug 8, 2023

I started setting up a zarr dataset in this repo, but didn't have a good place to host the data (other than github): https://github.com/lowe-lab-ucl/cell-cycle-scivision

Have you uploaded the data to GitHub? I've found the data.yml, but not the dataset.

@ots22
Copy link
Member

ots22 commented Aug 22, 2023

Include in recommendations for data providers? #343

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Development

No branches or pull requests

3 participants