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Missingness error using SweeD version 4.0.0 #26

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dhimanamar opened this issue Dec 30, 2022 · 3 comments
Open

Missingness error using SweeD version 4.0.0 #26

dhimanamar opened this issue Dec 30, 2022 · 3 comments

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@dhimanamar
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I am trying to run SweeD version 4.0.0 with -missing 0.1, but I am getting an error message, which looks like this:

ERROR: There are 141 nucleotides in line 167. Expected 142 (according to the first SNP in line 62).

SweeD: SweeD_Input.c:3867: readLine_VCF: Assertion `j==*SNP_SZ' failed.
/var/spool/slurmd/job6372107/slurm_script: line 24: 21940 Aborted (core dumped) /home/dhiman/softwares/sweed-master/SweeD -name chr1_sugar_beet -input chr1_sugar_beet_0.6.recode.vcf -grid 575925 -folded -missing 0.1

Could you please help me out in fixing this problem, and also the threads flg does not work.
Kind regards,
Amar

@luciaximena
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Hi,
I get the exact same error line, did you manage to solve it? If so, how?

Thanks!
Ximena

@Ahmad-40
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Hi,
I have the same error line, did you manage to solve it? If yes, then guide.

@normalyounger
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Hello, may I ask if this problem has been solved? I recently encountered the same problem and would be very grateful!

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4 participants