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I am trying to run SweeD version 4.0.0 with -missing 0.1, but I am getting an error message, which looks like this:
ERROR: There are 141 nucleotides in line 167. Expected 142 (according to the first SNP in line 62).
SweeD: SweeD_Input.c:3867: readLine_VCF: Assertion `j==*SNP_SZ' failed. /var/spool/slurmd/job6372107/slurm_script: line 24: 21940 Aborted (core dumped) /home/dhiman/softwares/sweed-master/SweeD -name chr1_sugar_beet -input chr1_sugar_beet_0.6.recode.vcf -grid 575925 -folded -missing 0.1
Could you please help me out in fixing this problem, and also the threads flg does not work. Kind regards, Amar
The text was updated successfully, but these errors were encountered:
Hi, I get the exact same error line, did you manage to solve it? If so, how?
Thanks! Ximena
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Hi, I have the same error line, did you manage to solve it? If yes, then guide.
Hello, may I ask if this problem has been solved? I recently encountered the same problem and would be very grateful!
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I am trying to run SweeD version 4.0.0 with -missing 0.1, but I am getting an error message, which looks like this:
ERROR: There are 141 nucleotides in line 167. Expected 142 (according to the first SNP in line 62).
SweeD: SweeD_Input.c:3867: readLine_VCF: Assertion `j==*SNP_SZ' failed.
/var/spool/slurmd/job6372107/slurm_script: line 24: 21940 Aborted (core dumped) /home/dhiman/softwares/sweed-master/SweeD -name chr1_sugar_beet -input chr1_sugar_beet_0.6.recode.vcf -grid 575925 -folded -missing 0.1
Could you please help me out in fixing this problem, and also the threads flg does not work.
Kind regards,
Amar
The text was updated successfully, but these errors were encountered: