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tool_shed_tool_list.yaml
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tool_shed_tool_list.yaml
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api_key: d055c8b15e1badc10475ad75f2500bd9
galaxy_instance: 115.146.85.128
tools:
- name: prop_venn
owner: idot
tool_panel_section_id: plots
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: xy_plot
owner: devteam
tool_panel_section_id: plots
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: fasta_stats
owner: simon-gladman
tool_panel_section_id: fasta_manipulation
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: fasta_extract
owner: simon-gladman
tool_panel_section_id: fasta_manipulation
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: trimmomatic_0_22
owner: simon-gladman
tool_panel_section_id: NGS_QC
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: fastx_clipper
owner: devteam
tool_panel_section_id: fasta_manipulation
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: fastx_collapser
owner: devteam
tool_panel_section_id: fasta_manipulation
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: velvet_optimiser_2_2_5
owner: simon-gladman
tool_panel_section_id: ngs_assembly
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: differential_count_models
owner: fubar
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: htseq_bams_to_count_matrix
owner: fubar
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: cuffcompare
owner: devteam
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: cuffdiff
owner: devteam
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: cufflinks
owner: devteam
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: cuffmerge
owner: devteam
tool_panel_section_id: ngs-rna-tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bam_to_fastq
owner: brad-chapman
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: sam_to_bam
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: sam_pileup
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: samtools_mpileup
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: sam_merge
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: sam_bitwise_flag_filter
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: sam2interval
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bam_to_sam
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: pileup_interval
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: pileup_parser
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: samtools_flagstat
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: samtools_rmdup
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: samtools_slice_bam
owner: devteam
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bcftools_view
owner: gregory-minevich
tool_panel_section_id: samtools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bwa_wrappers
owner: devteam
tool_panel_section_id: ngs:_mapping
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bowtie_wrappers
owner: devteam
tool_panel_section_id: ngs:_mapping
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bowtie_color_wrappers
owner: devteam
tool_panel_section_id: ngs:_mapping
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bowtie2
owner: devteam
tool_panel_section_id: ngs:_mapping
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: freebayes
owner: devteam
tool_panel_section_id: ngs:_variant_detection
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: ensembl_vep
owner: alonie
tool_panel_section_id: ngs_annotation
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: bedtools
owner: aaronquinlan
tool_panel_section_id: bed_tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: snpeff
owner: iuc
tool_panel_section_id: ngs_annotation
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: truststore_import
owner: cathywise
tool_panel_section_id: getext
tool_shed_url: http://testtoolshed.g2.bx.psu.edu
- name: all_vcftools
owner: devteam
tool_panel_section_id: ngs_vcf_tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: gatk2
owner: iuc
tool_panel_section_id: gatk2
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: tophat2
owner: devteam
tool_panel_section_id: gs-rna-tools
tool_shed_url: http://toolshed.g2.bx.psu.edu
- name: picard
owner: devteam
tool_panel_section_id: ngs_picard
tool_shed_url: http://toolshed.g2.bx.psu.edu