Skip to content

Latest commit

 

History

History
24 lines (16 loc) · 984 Bytes

NEWS.md

File metadata and controls

24 lines (16 loc) · 984 Bytes
Raw

palmid 0.0.4

Features

  • Added Text Summary to the palmid Report
  • Added 'nickname' mnemonics for each viral sOTU
  • Added SRA-STAT taxonomy analysis

Bug Fixes

  • Fixed qlen bug misreporting from palmscan with long sequences

palmid 0.0.3

  • Initial release. palmid is a containerized analysis suite and R-package for the classification of viral RNA-dependent RNA Polymerases (RdRP) based on the palmprint sub-domain and the RNA viral palmprint database palmdb.

Features

  • Reading of palmscan and palmDB/DIAMOND-based alignment output files.
  • Automated access to the Serratus SQL-server and cross-database analysis of input sequences.
  • Taxonomic inference of input viral sequencing based on RdRP protein identity.
  • Geospatial and temporal analysis of virus-sequence matches.
  • Virus-associated host organism analysis of the Sequence Read Archive.
  • Containerized work environment for reproducible deployment.