diff --git a/example_gene_list_file.regions_hg19.csv b/example_gene_list_file.regions_hg19.csv new file mode 100644 index 0000000..77f9d85 --- /dev/null +++ b/example_gene_list_file.regions_hg19.csv @@ -0,0 +1,10 @@ +chr12 25398280 25398285 KRAS 1 B NotW +chr7 140453135 140453137 BRAF 1 B NotW +chr17 7579441 7579443 TP53 1 B NotW +chr17 7577537 7577539 TP53 1 B NotW +chr17 7577119 7577121 TP53 1 B NotW +chr3 178936082 178936084 PIK3CA 1 B NotW +chr3 178936091 178936093 PIK3CA 1 B NotW +chr3 178952084 178952086 PIK3CA 1 B NotW +chr5 112103068 112103070 APC 1 B NotW +chr7 55242466 55242480 EGFR 1 B W diff --git a/example_gene_list_file.regions_hg38.csv b/example_gene_list_file.regions_hg38.csv new file mode 100644 index 0000000..f601aff --- /dev/null +++ b/example_gene_list_file.regions_hg38.csv @@ -0,0 +1,10 @@ +chr12 25245346 25245351 KRAS 1 B NotW +chr7 140753335 140753337 BRAF 1 B NotW +chr17 7676123 7676125 TP53 1 B NotW +chr17 7674219 7674221 TP53 1 B NotW +chr17 7673801 7673803 TP53 1 B NotW +chr3 179218294 179218296 PIK3CA 1 B NotW +chr3 179218303 179218305 PIK3CA 1 B NotW +chr3 179234296 179234298 PIK3CA 1 B NotW +chr5 112767371 112767373 APC 1 B NotW +chr7 55174773 55174787 EGFR 1 B W diff --git a/example_gene_list_file2.regions_hg19.csv b/example_gene_list_file2.regions_hg19.csv new file mode 100644 index 0000000..014dd4b --- /dev/null +++ b/example_gene_list_file2.regions_hg19.csv @@ -0,0 +1,2 @@ +chr2 29448327 29448431 ALK_19 1 B NotW +chr2 29446208 29446394 ALK_20 1 B NotW diff --git a/example_gene_list_file2.regions_hg19.edited.csv b/example_gene_list_file2.regions_hg19.edited.csv new file mode 100644 index 0000000..72e0c54 --- /dev/null +++ b/example_gene_list_file2.regions_hg19.edited.csv @@ -0,0 +1 @@ +chr2 29446208 29446215 ALK_20 1 L W diff --git a/example_gene_list_file2.txt b/example_gene_list_file2.txt new file mode 100644 index 0000000..132cc2d --- /dev/null +++ b/example_gene_list_file2.txt @@ -0,0 +1,2 @@ +Gene Exons Codons +ALK 19-20