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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(CellChat_theme_opts)
export(addMeta)
export(aggregateNet)
export(buildSNN)
export(computeCommunProb)
export(computeCommunProbPathway)
export(computeEigengap)
export(computeLaplacian)
export(computeNetD_structure)
export(computeNetSimilarity)
export(computeNetSimilarityPairwise)
export(createCellChat)
export(extractGene)
export(geometricMean)
export(ggPalette)
export(identifyCommunicationPatterns)
export(identifyOverExpressedGenes)
export(identifyOverExpressedInteractions)
export(mergeCellChat)
export(netAnalysis_contribution)
export(netAnalysis_dot)
export(netAnalysis_river)
export(netAnalysis_signalingRole)
export(netClustering)
export(netEmbedding)
export(netVisual)
export(netVisual_aggregate)
export(netVisual_bubble)
export(netVisual_circle)
export(netVisual_embedding)
export(netVisual_embeddingPairwise)
export(netVisual_embeddingPairwiseZoomIn)
export(netVisual_embeddingZoomIn)
export(netVisual_hierarchy1)
export(netVisual_hierarchy2)
export(netVisual_individual)
export(netVisual_signalingRole)
export(normalizeData)
export(pieChart)
export(projectData)
export(rankNet)
export(rankNetPairwise)
export(rankSimilarity)
export(runPCA)
export(runUMAP)
export(scPalette)
export(scaleData)
export(scaleMat)
export(searchPair)
export(setIdent)
export(showDatabaseCategory)
export(sketchData)
export(subsetDB)
export(subsetData)
export(triMean)
exportClasses(CellChat)
import(ggalluvial)
import(ggplot2)
import(igraph)
import(reticulate)
importClassesFrom(Matrix,dgCMatrix)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,draw)
importFrom(FNN,get.knn)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(NMF,nmf)
importFrom(NMF,nmfEstimateRank)
importFrom(RColorBrewer,brewer.pal)
importFrom(RSpectra,eigs_sym)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(cowplot,draw_label)
importFrom(cowplot,ggdraw)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(dplyr,top_n)
importFrom(future,nbrOfWorkers)
importFrom(future,plan)
importFrom(future.apply,future_sapply)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(graphics,symbols)
importFrom(grid,gpar)
importFrom(grid,grid.draw)
importFrom(grid,grid.grabExpr)
importFrom(grid,grid.newpage)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(grid,unit)
importFrom(grid,viewport)
importFrom(igraph,authority_score)
importFrom(igraph,betweenness)
importFrom(igraph,eigen_centrality)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,hub_score)
importFrom(igraph,page_rank)
importFrom(igraph,strength)
importFrom(irlba,irlba)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,slot)
importFrom(pbapply,pbsapply)
importFrom(reticulate,import)
importFrom(scales,percent)
importFrom(shape,Arrows)
importFrom(sna,flowbet)
importFrom(sna,infocent)
importFrom(stats,aggregate)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stats,wilcox.test)
importFrom(svglite,svglite)
useDynLib(CellChat, .registration = TRUE)