pain_estimation_full.py

import os
import numpy as np
import torch
import torch.nn as nn
from torch.utils.data import DataLoader
import torch.optim as optim
from tqdm import tqdm
import logging

from model.ANFL import MEFARG, PainEstimation, BackboneOnly, FullPictureMEFARG
from dataset import *
from utils import *
from conf import get_config,set_logger,set_outdir,set_env

def get_dataloader(conf):
    print('==> Preparing data...')
    if conf.dataset == 'UNBC':
        trainset = UNBC(conf.dataset_path, train=True, fold = conf.fold, transform=image_train(crop_size=conf.crop_size), crop_size=conf.crop_size, stage = 3)
        train_loader = DataLoader(trainset, batch_size=conf.batch_size, shuffle=True, num_workers=conf.num_workers)
        valset = UNBC(conf.dataset_path, train=False, fold=conf.fold, transform=image_test(crop_size=conf.crop_size), stage = 3)
        val_loader = DataLoader(valset, batch_size=conf.batch_size, shuffle=False, num_workers=conf.num_workers)

    return train_loader, val_loader, len(trainset), len(valset)


# Train
def train(conf,net,train_loader,optimizer,epoch,criterion):
    losses = AverageMeter()
    net.train()
    train_loader_len = len(train_loader)
    for batch_idx, (inputs,  targets) in enumerate(tqdm(train_loader)):
        adjust_learning_rate(optimizer, epoch, conf.epochs, conf.learning_rate, batch_idx, train_loader_len)
        targets = targets.float()
        if torch.cuda.is_available():
            inputs, targets = inputs.cuda(), targets.cuda()
        optimizer.zero_grad()
        outputs = net(inputs)
        loss = criterion(outputs, targets)
        loss.backward()
        optimizer.step()
        losses.update(loss.data.item(), inputs.size(0))
    return losses.avg


# Val
def val(net,val_loader,criterion):
    losses = AverageMeter()
    net.eval()
    statistics_list = None
    for batch_idx, (inputs, targets) in enumerate(tqdm(val_loader)):
        with torch.no_grad():
            targets = targets.float()
            if torch.cuda.is_available():
                inputs, targets = inputs.cuda(), targets.cuda()
            outputs = net(inputs)
            loss = criterion(outputs, targets)
            losses.update(loss.data.item(), inputs.size(0))
            update_list = statistics_softmax(outputs, targets.detach())
            statistics_list = update_statistics_list(statistics_list, update_list)
    mean_f1_score, f1_score_list = calc_f1_score(statistics_list)
    mean_acc, acc_list = calc_acc(statistics_list)
    return losses.avg, mean_f1_score, f1_score_list, mean_acc, acc_list


def main(conf):
    if conf.dataset == 'UNBC':
        if conf.binary:
            dataset_info = UNBC_pain_infolist_binary
        else:
            dataset_info = UNBC_pain_infolist

    start_epoch = 0
    # data
    train_loader,val_loader,train_data_num,val_data_num = get_dataloader(conf)
    train_weight = torch.from_numpy(np.loadtxt(os.path.join(conf.dataset_path, 'list', conf.dataset+'_pspi_w_fold'+str(conf.fold)+'.txt')))

    logging.info("Fold: [{} | {}  val_data_num: {} ]".format(conf.fold, conf.N_fold, val_data_num))

    net = FullPictureMEFARG(num_classes=conf.num_classes, backbone=conf.arc, neighbor_num=conf.neighbor_num, metric=conf.metric, binary=conf.binary)
    # resume
    if conf.resume != '':
        logging.info("Resume form | {} ]".format(conf.resume))
        net = load_state_dict(net, conf.resume)

    if torch.cuda.is_available():
        net = nn.DataParallel(net).cuda()

    criterion = WeightedCrossEntropyLoss(weight=train_weight)
    optimizer = optim.AdamW(net.parameters(),  betas=(0.9, 0.999), lr=conf.learning_rate, weight_decay=conf.weight_decay)
    print('the init learning rate is ', conf.learning_rate)

    #train and val
    for epoch in range(start_epoch, conf.epochs):
        lr = optimizer.param_groups[0]['lr']
        logging.info("Epoch: [{} | {} LR: {} ]".format(epoch + 1, conf.epochs, lr))
        train_loss = train(conf,net,train_loader,optimizer,epoch,criterion)
        val_loss, val_mean_f1_score, val_f1_score, val_mean_acc, val_acc = val(net, val_loader, criterion)

        # log
        infostr = {'Epoch:  {}   train_loss: {:.5f}  val_loss: {:.5f}  val_mean_f1_score {:.2f},val_mean_acc {:.2f}'
                   .format(epoch + 1, train_loss, val_loss, 100.* val_mean_f1_score, 100.* val_mean_acc)}

        logging.info(infostr)
        infostr = {'F1-score-list:'}
        logging.info(infostr)
        infostr = dataset_info(val_f1_score)
        logging.info(infostr)
        infostr = {'Acc-list:'}
        logging.info(infostr)
        infostr = dataset_info(val_acc)
        logging.info(infostr)

        # save checkpoints
        if (epoch+1) % 1 == 0:
            checkpoint = {
                'epoch': epoch,
                'state_dict': net.state_dict(),
                'optimizer': optimizer.state_dict(),
            }
            torch.save(checkpoint, os.path.join(conf['outdir'], 'epoch' + str(epoch + 1) + '_model_fold' + str(conf.fold) + '.pth'))

        checkpoint = {
            'epoch': epoch,
            'state_dict': net.state_dict(),
            'optimizer': optimizer.state_dict(),
        }
        torch.save(checkpoint, os.path.join(conf['outdir'], 'cur_model_fold' + str(conf.fold) + '.pth'))


# ---------------------------------------------------------------------------------


if __name__=="__main__":
    conf = get_config()
    set_env(conf)
    # generate outdir name
    set_outdir(conf)
    # Set the logger
    set_logger(conf)
    main(conf)