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ER diagram_CALIBRATION.graphml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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<!--Created by yEd 3.20.1-->
<key attr.name="Description" attr.type="string" for="graph" id="d0"/>
<key for="port" id="d1" yfiles.type="portgraphics"/>
<key for="port" id="d2" yfiles.type="portgeometry"/>
<key for="port" id="d3" yfiles.type="portuserdata"/>
<key attr.name="url" attr.type="string" for="node" id="d4"/>
<key attr.name="description" attr.type="string" for="node" id="d5"/>
<key for="node" id="d6" yfiles.type="nodegraphics"/>
<key for="graphml" id="d7" yfiles.type="resources"/>
<key attr.name="url" attr.type="string" for="edge" id="d8"/>
<key attr.name="description" attr.type="string" for="edge" id="d9"/>
<key for="edge" id="d10" yfiles.type="edgegraphics"/>
<graph edgedefault="directed" id="G">
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<y:GenericNode configuration="com.yworks.entityRelationship.big_entity">
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<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#1C4A87" configuration="CroppingLabel" fontFamily="Dialog" fontSize="32" fontStyle="plain" hasLineColor="false" height="44.6875" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="96.40625" x="451.72581317999175" xml:space="preserve" y="4.0">Notes</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" backgroundColor="#FFFFFF" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="16" fontStyle="plain" height="625.84375" horizontalTextPosition="center" iconTextGap="4" lineColor="#FFFFFF" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="984.5703125" x="2.0" xml:space="preserve" y="56.6875">Blue edges, blue edges represent RELATIONSHIPs between entities. SOLID EDGES are used to connect an Element with a
REQUIRED Sub-Element. DASHED EDGED are used to connect an Element with an OPTIONAL Sub-Element. In addition,
different CARDINALITIES can be represented as follow:
Black dashed arrows, these arrows simbolize an inheritance relationship similar to what would connect a hypothetical "Feline"
parent element with a "Cat" child element. In this example, while the "Cat" element represents a "concrete" entity that exist in
the real-world, the "Feline" element represents an "abstract" category that is only useful for categorization pruposes. In a
similar manner, these arrows connect concrete elements that represents actual microscope hardware components with their
Abstract Parent Elements (APE), which are utilized for making the model less repetitive and more efficient to read by software
tools. These arrows should be read as follows, a "Laser" IS-A "LightSource".
Dashed grey edges, these edges signify "Extends" and they should be read as follows: "Objective" extends
"ManufacturerSpecs". In this example, the concept of extension indicates that Objective is of type "ManufacturerSpecs" but it
has additional attributes that are unique to it and distinguishes from other elements.
-----
-AnnotationRef, This element always refers to a Comment/Annotation element as described for Channel. However for
simplicity sake most Comment/Annotation elements have been omitted and the AnnotationRef has been inserted in the
referring element as an attribute.
-[Sub-Element], For simplicity and when indicated Sub-Elements are listed within the referring element as an attribute.
-References, For simplicity and when indicated, Reference elements (e.g., ImageRef) are listed whithin the referring element
as attributes.
-Units were omitted from this diagram for simplicity. However, they are essential for reproducibility and they are included
in the model and in all its formal representations.
-Attributes listed after the --- separator have been added to the OME Core as part of the proposed revision.
-Attributes listed in parenthesis and after the .... separator have been removed as part of the proposed extension.
-APE, Abstract Parent Entity (see explanation above).<y:LabelModel><y:ErdAttributesNodeLabelModel/></y:LabelModel><y:ModelParameter><y:ErdAttributesNodeLabelModelParameter/></y:ModelParameter></y:NodeLabel>
<y:StyleProperties>
<y:Property class="java.lang.Boolean" name="y.view.ShadowNodePainter.SHADOW_PAINTING" value="true"/>
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<node id="n1">
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<y:LabelModel>
<y:SmartNodeLabelModel distance="4.0"/>
</y:LabelModel>
<y:ModelParameter>
<y:SmartNodeLabelModelParameter labelRatioX="0.0" labelRatioY="0.0" nodeRatioX="0.0" nodeRatioY="0.0" offsetX="0.0" offsetY="0.0" upX="0.0" upY="-1.0"/>
</y:ModelParameter>
</y:NodeLabel>
<y:Shape type="rectangle"/>
</y:ShapeNode>
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<node id="n2">
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<y:GenericNode configuration="com.yworks.entityRelationship.big_entity">
<y:Geometry height="81.14727053553679" width="300.0" x="-4649.578226636877" y="-2134.9345033171912"/>
<y:Fill color="#CCCCCC" color2="#DE6B62" transparent="false"/>
<y:BorderStyle hasColor="false" type="line" width="1.0"/>
<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#87241C" configuration="com.yworks.entityRelationship.label.name" fontFamily="Dialog" fontSize="20" fontStyle="plain" hasLineColor="false" height="51.109375" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="178.677734375" x="60.6611328125" xml:space="preserve" y="4.0">OpticalCalibration
ImageRef</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="12" fontStyle="plain" hasBackgroundColor="false" hasLineColor="false" height="18.1328125" horizontalTextPosition="center" iconTextGap="4" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="75.947265625" x="2.0" xml:space="preserve" y="63.109375">ID (ImageID)
<y:LabelModel><y:ErdAttributesNodeLabelModel/></y:LabelModel><y:ModelParameter><y:ErdAttributesNodeLabelModelParameter/></y:ModelParameter></y:NodeLabel>
<y:StyleProperties>
<y:Property class="java.lang.Boolean" name="y.view.ShadowNodePainter.SHADOW_PAINTING" value="true"/>
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<y:Geometry height="57.86891018742517" width="205.0" x="-5199.387643042814" y="-2625.398037560178"/>
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<y:BorderStyle hasColor="false" type="line" width="1.0"/>
<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#87241C" configuration="com.yworks.entityRelationship.label.name" fontFamily="Dialog" fontSize="20" fontStyle="plain" hasLineColor="false" height="51.109375" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="200.220703125" x="2.3896484375" xml:space="preserve" y="4.0">CalibrationSoftware
(IS-A Software)</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="12" fontStyle="plain" hasBackgroundColor="false" hasLineColor="false" hasText="false" height="4.0" horizontalTextPosition="center" iconTextGap="4" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="4.0" x="2.0" y="63.109375">
<y:LabelModel>
<y:ErdAttributesNodeLabelModel/>
</y:LabelModel>
<y:ModelParameter>
<y:ErdAttributesNodeLabelModelParameter/>
</y:ModelParameter>
</y:NodeLabel>
<y:StyleProperties>
<y:Property class="java.lang.Boolean" name="y.view.ShadowNodePainter.SHADOW_PAINTING" value="true"/>
</y:StyleProperties>
</y:GenericNode>
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<data key="d6">
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<y:Geometry height="335.02228023809084" width="214.9999999999991" x="-4922.287376016309" y="-2546.5386623979857"/>
<y:Fill color="#CCCCCC" color2="#DE6B62" transparent="false"/>
<y:BorderStyle hasColor="false" type="line" width="1.0"/>
<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#87241C" configuration="com.yworks.entityRelationship.label.name" fontFamily="Dialog" fontSize="20" fontStyle="plain" hasLineColor="false" height="27.5546875" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="178.677734375" x="18.1611328125" xml:space="preserve" y="4.0">OpticalCalibration</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="12" fontStyle="plain" hasBackgroundColor="false" hasLineColor="false" height="286.65625" horizontalTextPosition="center" iconTextGap="4" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="180.982421875" x="2.0" xml:space="preserve" y="39.5546875">ID
Date
TheoreticalXYSpotSize_FWHM
MedianXYSpotSize_FWHM
MinXYSpotSize_FWHM
MaxXYSpotSize_FWHM
TheoreticaZSpotSize_FWHM
MedianZSpotSize_FWHM
Planarity
LateralAsymmetry
AxialAsymmetry
CheckedNA
Z-Dimension
NyquistRate
SampleSize
PSFEquation
AnnotationRef
PSFEquationFile [Sub-Element]
OpticalCalibrationReport
[Sub-Element]<y:LabelModel><y:ErdAttributesNodeLabelModel/></y:LabelModel><y:ModelParameter><y:ErdAttributesNodeLabelModelParameter/></y:ModelParameter></y:NodeLabel>
<y:StyleProperties>
<y:Property class="java.lang.Boolean" name="y.view.ShadowNodePainter.SHADOW_PAINTING" value="true"/>
</y:StyleProperties>
</y:GenericNode>
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<data key="d6">
<y:GenericNode configuration="com.yworks.entityRelationship.big_entity">
<y:Geometry height="165.22860456269746" width="298.87670372984394" x="-5711.452594071799" y="-2761.8928756772066"/>
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<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#87241C" configuration="com.yworks.entityRelationship.label.name" fontFamily="Dialog" fontSize="20" fontStyle="plain" hasLineColor="false" height="51.109375" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="284.64453125" x="7.1160862399219695" xml:space="preserve" y="4.0">IntensityCalibrationTool
(extends ManufacturerSpecs)</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="12" fontStyle="plain" hasBackgroundColor="false" hasLineColor="false" height="102.9296875" horizontalTextPosition="center" iconTextGap="4" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="118.15234375" x="2.0" xml:space="preserve" y="63.109375">ID
Name
Type
CalibrationType
LastCalibrationDate
LightSensorRef
AnnotationRef<y:LabelModel><y:ErdAttributesNodeLabelModel/></y:LabelModel><y:ModelParameter><y:ErdAttributesNodeLabelModelParameter/></y:ModelParameter></y:NodeLabel>
<y:StyleProperties>
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<y:NodeLabel alignment="center" autoSizePolicy="content" backgroundColor="#87241C" configuration="com.yworks.entityRelationship.label.name" fontFamily="Dialog" fontSize="20" fontStyle="plain" hasLineColor="false" height="51.109375" horizontalTextPosition="center" iconTextGap="4" modelName="internal" modelPosition="t" textColor="#FFFFFF" verticalTextPosition="bottom" visible="true" width="157.486328125" x="46.2568359375" xml:space="preserve" y="4.0">Intensity
Calibration-APE</y:NodeLabel>
<y:NodeLabel alignment="left" autoSizePolicy="content" configuration="com.yworks.entityRelationship.label.attributes" fontFamily="Dialog" fontSize="12" fontStyle="plain" hasBackgroundColor="false" hasLineColor="false" height="131.1953125" horizontalTextPosition="center" iconTextGap="4" modelName="custom" textColor="#000000" verticalTextPosition="bottom" visible="true" width="204.42578125" x="2.0" xml:space="preserve" y="63.109375">ID
Date
SampleSize
Method
IntensityCalibrationToolRef
AnnotationRef
IntensityCalibrationReport
[Sub-Element]
CalibrationSoftware [Sub-Element]<y:LabelModel><y:ErdAttributesNodeLabelModel/></y:LabelModel><y:ModelParameter><y:ErdAttributesNodeLabelModelParameter/></y:ModelParameter></y:NodeLabel>
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MeasuredXRepeatability_SD
MeasuredYRepeatability_SD
MeasuredFocalRepeatability_SD
MeasuredXSettlingTime_SD
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