mkdocs.yml

site_name: SeqMule Documentation
site_url: http://seqmule.openbioinformatics.org/
repo_url: http://github.com/WGLab/SeqMule/
repo_name: GitHub
site_description: Documentation for SeqMule software
site_author: Yunfei Guo, et al
site_favicon: favicon.ico
copyright: 2012-2016 USC WangLab

docs_dir: doc

pages:
- SeqMule: index.md

- Installation: Installation.md

- Tutorials: 
  - 'Quick Start': 'Tutorials/Quick start.md'
  - 'Analysis': 'Tutorials/Analysis.md'
  - 'Execution': 'Tutorials/Execution.md'

- Manuals: 
  - 'seqmule download': 'Manuals/download.md'
  - 'seqmule pipeline': 'Manuals/pipeline.md'
  - 'seqmule run': 'Manuals/run.md'
  - 'seqmule stats': 'Manuals/stats.md'
  - 'seqmule update': 'Manuals/update.md'

- Miscellaneous: 
  - 'FAQ': 'Miscellaneous/FAQ.md'
  - 'Version History': 'Miscellaneous/ChangeLog.md'
  - 'TechNotes': 'Miscellaneous/TechNotes.md'
  - 'Caveats': 'Miscellaneous/Caveats.md'