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Palladium Nanocluster Lattice Kinetic Monte Carlo Simulation Sample Inputs

These folders contain sample Zacros simulation inputs and simple graphics produced from outputs for Pd nanocluster formation simulations.

Adsorption_only:

  • Preset cluster of Pd5_3d including only CO adsorption and desorption events.

Pd_only:

  • Simulations of Pd as both scattered single atoms and Pd4_3d clusters on a lattice without CO pressure.

PdCO:

  • Simulations of Pd as both scattered single atoms and Pd4_3d clusters on a lattice with CO pressure.

Included Files:

Inputs:

  • energetics_input - energy interactions between static molecules
  • lattice_input - size and sites of unit cell
  • mechanism_input - how molecules can move
  • simulation_input - simulation conditions, including temperature, pressure, data collection, and end conditions
  • state_input - initial positioning of molecules

Graphics:

  • lattice_frames_3D - series of snapshots of lattice state
  • elem_step_freqs - counts of how many times each event occured
  • gas_spec_vs_time - change in gas species throughout simulation
  • lattice - empty lattice, shows unit cell locations
  • surf_spec_vs_time - shows change in surface species throughout simulation

While the names of simulation folders reflect their conditions, additional information is provided in the accompanying README.