train_tracking_s3_psql.py

# The data set used in this example is from http://archive.ics.uci.edu/ml/datasets/Wine+Quality
# P. Cortez, A. Cerdeira, F. Almeida, T. Matos and J. Reis.
# Modeling wine preferences by data mining from physicochemical properties. In Decision Support Systems, Elsevier, 47(4):547-553, 2009.

import os
import warnings
import sys

import pandas as pd
import numpy as np
from sklearn.metrics import mean_squared_error, mean_absolute_error, r2_score
from sklearn.model_selection import train_test_split
from sklearn.linear_model import ElasticNet

import mlflow
import mlflow.sklearn

import logging
logging.basicConfig(level=logging.WARN)
logger = logging.getLogger(__name__)

os.environ["MLFLOW_S3_ENDPOINT_URL"] = "http://127.0.0.1:9000"
os.environ["AWS_ACCESS_KEY_ID"] = "minioadmin"
os.environ["AWS_SECRET_ACCESS_KEY"] = "minioadmin"

def eval_metrics(actual, pred):
    rmse = np.sqrt(mean_squared_error(actual, pred))
    mae = mean_absolute_error(actual, pred)
    r2 = r2_score(actual, pred)
    return rmse, mae, r2

if __name__ == "__main__":
    mlflow.set_tracking_uri(os.getenv("MLFLOW_TRACKING_URI",
                                      "http://127.0.0.1:5000"))
    mlflow.set_experiment("Elastic Net")

    warnings.filterwarnings("ignore")
    np.random.seed(40)

    # Read the wine-quality csv file from the URL
    csv_url =\
        'http://archive.ics.uci.edu/ml/machine-learning-databases/wine-quality/winequality-red.csv'
    try:
        data = pd.read_csv(csv_url, sep=';')
    except Exception as e:
        logger.exception(
            "Unable to download training & test CSV, check your internet connection. Error: %s", e)

    # Split the data into training and test sets. (0.75, 0.25) split.
    train, test = train_test_split(data)

    # The predicted column is "quality" which is a scalar from [3, 9]
    train_x = train.drop(["quality"], axis=1)
    test_x = test.drop(["quality"], axis=1)
    train_y = train[["quality"]]
    test_y = test[["quality"]]

    alpha = float(sys.argv[1]) if len(sys.argv) > 1 else 0.5
    l1_ratio = float(sys.argv[2]) if len(sys.argv) > 2 else 0.5

    with mlflow.start_run():
        lr = ElasticNet(alpha=alpha, l1_ratio=l1_ratio, random_state=42)
        lr.fit(train_x, train_y)

        predicted_qualities = lr.predict(test_x)

        (rmse, mae, r2) = eval_metrics(test_y, predicted_qualities)

        print("Elasticnet model (alpha=%f, l1_ratio=%f):" % (alpha, l1_ratio))
        print("  RMSE: %s" % rmse)
        print("  MAE: %s" % mae)
        print("  R2: %s" % r2)

        mlflow.log_param("alpha", alpha)
        mlflow.log_param("l1_ratio", l1_ratio)
        mlflow.log_metric("rmse", rmse)
        mlflow.log_metric("r2", r2)
        mlflow.log_metric("mae", mae)

        mlflow.sklearn.log_model(lr, "model")