Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Dependency 'bold' not available #46

Open
Lothyrden opened this issue Oct 7, 2024 · 2 comments
Open

Dependency 'bold' not available #46

Lothyrden opened this issue Oct 7, 2024 · 2 comments

Comments

@Lothyrden
Copy link

Hi,

Im trying to install PrimerMiner in R version 4.1.3. by following the YouTube tutorial but I keep getting the same error:

ERROR: dependency 'bold' is not available for package 'PrimerMiner'

  • removing 'C:/Users/Louise/Documents/R/win-library/4.1/PrimerMiner'
    Warning in install.packages :
    installation of package ‘PrimerMiner’ had non-zero exit status

RTools is downloaded with the corect version, so I don't know what Im supposed to do to fix this.

Any clue to solve this issue?

@thokall
Copy link

thokall commented Oct 16, 2024

The bold package has been removed from cran and hence can not be installed directly via the command install.packages as description found here states.
It can however be installed directly from the source code hosted here on github using the devtools package.

library(devtools)
devtools::install_github("ropensci/bold")
install.packages(c("XML", "rentrez", "seqinr"), dependencies=T)
install.packages("PrimerMiner", repos = NULL, type="source", dependencies=T)

@thokall
Copy link

thokall commented Nov 5, 2024

The package has been updated and moved from ropensci/bold to BOLDconnectR. So my comment above is no longer valid

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants