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infection_trans.owl
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@prefix : <http://www.purl.org/infection_trans#> .
@prefix om2: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <https://www.w3.org/2004/02/skos/#> .
@base <http://www.purl.org/infection_trans#> .
<http://www.purl.org/infection_trans#> rdf:type owl:Ontology .
#################################################################
# Annotation properties
#################################################################
### http://www.ontology-of-units-of-measure.org/resource/om-2/alternativeLabel
om2:alternativeLabel rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#closeMatch
<http://www.w3.org/2004/02/skos/core#closeMatch> rdf:type owl:AnnotationProperty .
#################################################################
# Object Properties
#################################################################
### http://www.ontology-of-units-of-measure.org/resource/om-2/commonlyHasUnit
om2:commonlyHasUnit rdf:type owl:ObjectProperty ;
rdfs:range om2:Unit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/hasAggregateFunction
om2:hasAggregateFunction rdf:type owl:ObjectProperty ;
rdfs:domain om2:Quantity ;
rdfs:range om2:Function ;
rdfs:label "has aggregate function"@en ,
"集計関数を持つ"@ja .
### http://www.ontology-of-units-of-measure.org/resource/om-2/hasPhenomenon
om2:hasPhenomenon rdf:type owl:ObjectProperty ;
rdfs:domain om2:Quantity ;
rdfs:range :Host ,
:Sample .
### http://www.ontology-of-units-of-measure.org/resource/om-2/hasUnit
om2:hasUnit rdf:type owl:ObjectProperty ;
rdfs:domain om2:Measure ;
rdfs:range om2:Unit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/hasValue
om2:hasValue rdf:type owl:ObjectProperty ;
rdfs:domain om2:Quantity ;
rdfs:range om2:Measure .
### http://www.purl.org/infection_trans#against
:against rdf:type owl:ObjectProperty ;
rdfs:domain :PathogenResistance ;
rdfs:range :Antibiotic .
### http://www.purl.org/infection_trans#hasDose
:hasDose rdf:type owl:ObjectProperty ;
rdfs:domain :Inoculation ,
:Treatment ;
rdfs:range om2:Quantity ,
om2:VolumetricViableCount .
### http://www.purl.org/infection_trans#hasEvent
:hasEvent rdf:type owl:ObjectProperty ;
rdfs:domain :Experiment ;
rdfs:range :Movement ,
:Observation .
### http://www.purl.org/infection_trans#hasGene
:hasGene rdf:type owl:ObjectProperty ;
rdfs:domain :Pathogen ;
rdfs:range :Gene .
### http://www.purl.org/infection_trans#hasHost
:hasHost rdf:type owl:ObjectProperty ;
rdfs:domain :Measurement ;
rdfs:range :Environment ,
:Host .
### http://www.purl.org/infection_trans#hasInoculation
:hasInoculation rdf:type owl:ObjectProperty ;
rdfs:domain :Experiment ;
rdfs:range :Inoculation .
### http://www.purl.org/infection_trans#hasMeasurement
:hasMeasurement rdf:type owl:ObjectProperty ;
rdfs:domain :Experiment ;
rdfs:range :Measurement .
### http://www.purl.org/infection_trans#hasPathogen
:hasPathogen rdf:type owl:ObjectProperty ;
rdfs:domain :Sample ;
rdfs:range :Pathogen .
### http://www.purl.org/infection_trans#hasQuantity
:hasQuantity rdf:type owl:ObjectProperty ;
rdfs:domain :Measurement ;
rdfs:range om2:BodyMass ,
om2:SpecificViableCount ,
om2:VolumetricViableCount .
### http://www.purl.org/infection_trans#hasResistance
:hasResistance rdf:type owl:ObjectProperty ;
rdfs:domain :Pathogen ;
rdfs:range :PathogenResistance .
### http://www.purl.org/infection_trans#hasSample
:hasSample rdf:type owl:ObjectProperty ;
rdfs:domain :Measurement ;
rdfs:range :Sample .
### http://www.purl.org/infection_trans#hasTreatment
:hasTreatment rdf:type owl:ObjectProperty ;
rdfs:domain :Experiment ;
rdfs:range :Treatment .
### http://www.purl.org/infection_trans#hasType
:hasType rdf:type owl:ObjectProperty ;
rdfs:domain :Observation ,
:Sample ;
rdfs:range :ObservationType ,
:SampleType .
### http://www.purl.org/infection_trans#includes
:includes rdf:type owl:ObjectProperty ;
rdfs:domain :Treatment ;
rdfs:range :Antibiotic ,
:Pathogen .
### http://www.purl.org/infection_trans#involves
:involves rdf:type owl:ObjectProperty ;
rdfs:domain :Inoculation ,
:Movement ,
:Observation ,
:Treatment ;
rdfs:range :Host .
### http://www.purl.org/infection_trans#locatedIn
:locatedIn rdf:type owl:ObjectProperty ;
rdfs:domain :Host ,
:Movement ;
rdfs:range :Environment .
### http://www.purl.org/infection_trans#takenFrom
:takenFrom rdf:type owl:ObjectProperty ;
rdfs:domain :Measurement ;
rdfs:range :Environment .
### http://www.purl.org/infection_trans#testedBy
:testedBy rdf:type owl:ObjectProperty ;
rdfs:domain :Sample ;
rdfs:range :DiagnosticTest .
#################################################################
# Data properties
#################################################################
### http://www.ontology-of-units-of-measure.org/resource/om-2/hasNumericalValue
om2:hasNumericalValue rdf:type owl:DatatypeProperty ;
rdfs:domain om2:Measure ;
rdfs:range rdfs:Literal .
### http://www.purl.org/infection_trans#age
:age rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#coordinates
:coordinates rdf:type owl:DatatypeProperty ;
rdfs:domain :Environment .
### http://www.purl.org/infection_trans#date
:date rdf:type owl:DatatypeProperty ;
rdfs:range xsd:dateTime .
### http://www.purl.org/infection_trans#detectionLimit
:detectionLimit rdf:type owl:DatatypeProperty ;
rdfs:domain :Sample .
### http://www.purl.org/infection_trans#experimentDay
:experimentDay rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#experimentHour
:experimentHour rdf:type owl:DatatypeProperty ;
rdfs:domain :Inoculation ,
:Measurement ,
:Treatment .
### http://www.purl.org/infection_trans#experimentID
:experimentID rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#experimentType
:experimentType rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#family
:family rdf:type owl:DatatypeProperty ;
rdfs:domain :Pathogen .
### http://www.purl.org/infection_trans#feedConsumption
:feedConsumption rdf:type owl:DatatypeProperty .
### http://www.purl.org/infection_trans#groupNumber
:groupNumber rdf:type owl:DatatypeProperty ;
rdfs:domain :Environment .
### http://www.purl.org/infection_trans#hourAfterInoculation
:hourAfterInoculation rdf:type owl:DatatypeProperty ;
rdfs:domain :Measurement .
### http://www.purl.org/infection_trans#id
:id rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#inoculationStatus
:inoculationStatus rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#level1
:level1 rdf:type owl:DatatypeProperty ;
rdfs:domain :Environment .
### http://www.purl.org/infection_trans#level2
:level2 rdf:type owl:DatatypeProperty ;
rdfs:domain :Environment .
### http://www.purl.org/infection_trans#level3
:level3 rdf:type owl:DatatypeProperty ;
rdfs:domain :Environment .
### http://www.purl.org/infection_trans#material
:material rdf:type owl:DatatypeProperty ;
rdfs:domain :Sample .
### http://www.purl.org/infection_trans#name
:name rdf:type owl:DatatypeProperty ;
rdfs:domain :Antibiotic ,
:Gene ,
:ObservationType ,
:Pathogen .
### http://www.purl.org/infection_trans#repetition
:repetition rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#result
:result rdf:type owl:DatatypeProperty ;
rdfs:domain :PathogenResistance ,
:Sample .
### http://www.purl.org/infection_trans#resultDate
:resultDate rdf:type owl:DatatypeProperty ;
rdfs:domain :Sample ;
rdfs:range xsd:dateTime .
### http://www.purl.org/infection_trans#sample
:sample rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#sex
:sex rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#strain
:strain rdf:type owl:DatatypeProperty ;
rdfs:domain :Pathogen .
### http://www.purl.org/infection_trans#studyDesign
:studyDesign rdf:type owl:DatatypeProperty ;
rdfs:domain :Experiment .
### http://www.purl.org/infection_trans#testName
:testName rdf:type owl:DatatypeProperty ;
rdfs:domain :DiagnosticTest .
### http://www.purl.org/infection_trans#treatment
:treatment rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#trialArm
:trialArm rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
### http://www.purl.org/infection_trans#type
:type rdf:type owl:DatatypeProperty ;
rdfs:domain :Host .
#################################################################
# Classes
#################################################################
### http://www.ontology-of-units-of-measure.org/resource/om-2/BodyMass
om2:BodyMass rdf:type owl:Class ;
rdfs:subClassOf om2:Quantity .
### http://www.ontology-of-units-of-measure.org/resource/om-2/Function
om2:Function rdf:type owl:Class ;
rdfs:label "function"@en ,
"関数"@ja .
### http://www.ontology-of-units-of-measure.org/resource/om-2/Measure
om2:Measure rdf:type owl:Class ;
rdfs:isDefinedBy "http://www.ontology-of-units-of-measure.org/resource/om-2/Measure" .
### http://www.ontology-of-units-of-measure.org/resource/om-2/Quantity
om2:Quantity rdf:type owl:Class ;
rdfs:isDefinedBy "http://www.ontology-of-units-of-measure.org/resource/om-2/Quantity" .
### http://www.ontology-of-units-of-measure.org/resource/om-2/SpecificViableCount
om2:SpecificViableCount rdf:type owl:Class ;
rdfs:subClassOf om2:Quantity ,
[ rdf:type owl:Restriction ;
owl:onProperty om2:hasValue ;
owl:allValuesFrom [ rdf:type owl:Restriction ;
owl:onProperty om2:hasUnit ;
owl:allValuesFrom om2:SpecificViableCountUnit
]
] .
### http://www.ontology-of-units-of-measure.org/resource/om-2/SpecificViableCountUnit
om2:SpecificViableCountUnit rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:oneOf ( om2:colonyFormingUnitPerGram
)
] ;
rdfs:subClassOf om2:Unit ;
rdfs:label "specific viable count unit"@en .
### http://www.ontology-of-units-of-measure.org/resource/om-2/Unit
om2:Unit rdf:type owl:Class ;
rdfs:comment "A unit of measure is a definite magnitude of a quantity, defined and adopted by convention or by law. It is used as a standard for measurement of the same quantity, where any other value of the quantity can be expressed as a simple multiple of the unit. For example, length is a quantity; the metre is a unit of length that represents a definite predetermined length. When we say 10 metre (or 10 m), we actually mean 10 times the definite predetermined length called \"metre\"." .
### http://www.ontology-of-units-of-measure.org/resource/om-2/VolumetricViableCount
om2:VolumetricViableCount rdf:type owl:Class ;
rdfs:subClassOf om2:Quantity ,
[ rdf:type owl:Restriction ;
owl:onProperty om2:hasValue ;
owl:allValuesFrom [ rdf:type owl:Restriction ;
owl:onProperty om2:hasUnit ;
owl:allValuesFrom om2:VolumetricViableCountUnit
]
] ;
rdfs:label "viable count (volumetric)"@en .
### http://www.ontology-of-units-of-measure.org/resource/om-2/VolumetricViableCountUnit
om2:VolumetricViableCountUnit rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:oneOf ( om2:_1000ColonyFormingUnitPerMillilitre
om2:colonyFormingUnitPer25Millilitre
om2:colonyFormingUnitPerMillilitre
)
] ;
rdfs:subClassOf om2:Unit ;
rdfs:label "volumetric viable count unit"@en .
### http://www.purl.org/infection_trans#Antibiotic
:Antibiotic rdf:type owl:Class ;
rdfs:comment "medicine used for treatmnet of a host" .
### http://www.purl.org/infection_trans#DiagnosticTest
:DiagnosticTest rdf:type owl:Class ;
rdfs:comment "any medical test performed to confirm, or determine the presence of disease in an individual suspected of having the disease" .
### http://www.purl.org/infection_trans#Environment
:Environment rdf:type owl:Class ;
rdfs:comment "location of the conducted experiment." .
### http://www.purl.org/infection_trans#Experiment
:Experiment rdf:type owl:Class ;
rdfs:comment "A transmission experiment specifies setup and day of the experiment." .
### http://www.purl.org/infection_trans#Gene
:Gene rdf:type owl:Class ;
rdfs:comment "the minimal contiguous stretch of DNA in a bacterium that contains the expressed and regulatory sequences sufficient to complement the function of a null mutation in trans." .
### http://www.purl.org/infection_trans#Host
:Host rdf:type owl:Class ;
rdfs:comment "a larger organism that harbours a smaller orgamisms." ;
rdfs:isDefinedBy "https://en.wikipedia.org/wiki/Host_(biology)" .
### http://www.purl.org/infection_trans#Inoculation
:Inoculation rdf:type owl:Class ;
rdfs:comment "a set of methods of artificially inducing immunity against various infectious diseases." .
### http://www.purl.org/infection_trans#Measurement
:Measurement rdf:type owl:Class ;
rdfs:isDefinedBy "process of associating numbers with physical quantities and phenomena. For example, indicating negative or positive sample, measuring bacteruim count or mass of host." .
### http://www.purl.org/infection_trans#Movement
:Movement rdf:type owl:Class ;
rdfs:comment "class that is used to specify if host has changed the environment during the experiment" ;
rdfs:label "Movement" .
### http://www.purl.org/infection_trans#Observation
:Observation rdf:type owl:Class ;
rdfs:comment "is a process of closely monitoring the host." .
### http://www.purl.org/infection_trans#ObservationType
:ObservationType rdf:type owl:Class ;
rdfs:comment "type of observation . For example, 'Death' or 'HighFever'" .
### http://www.purl.org/infection_trans#Pathogen
:Pathogen rdf:type owl:Class ;
rdfs:comment "an organism causing disease to its host." ;
<http://www.w3.org/2004/02/skos/core#closeMatch> "http://purl.obolibrary.org/obo/IDO_0000528" .
### http://www.purl.org/infection_trans#PathogenResistance
:PathogenResistance rdf:type owl:Class ;
rdfs:comment "an ability to limit pathogen burden." .
### http://www.purl.org/infection_trans#Sample
:Sample rdf:type owl:Class ;
rdfs:comment "A biological specimen including, for example, blood, tissue, urine, etc. taken from a host." .
### http://www.purl.org/infection_trans#SampleType
:SampleType rdf:type owl:Class ;
rdfs:comment "type of the sample. For example, swab sample or bootsock sample." .
### http://www.purl.org/infection_trans#Treatment
:Treatment rdf:type owl:Class ;
rdfs:comment "a process of giving medication or antibiotic to a host." .
#################################################################
# Individuals
#################################################################
### http://www.ontology-of-units-of-measure.org/resource/om-2/BodyMass
om2:BodyMass rdf:type owl:NamedIndividual ;
om2:commonlyHasUnit om2:gram ,
om2:kilogram ,
om2:tonne .
### http://www.ontology-of-units-of-measure.org/resource/om-2/_1000ColonyFormingUnitPerMillilitre
om2:_1000ColonyFormingUnitPerMillilitre rdf:type owl:NamedIndividual ,
om2:VolumetricViableCountUnit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/colonyFormingUnitPer25Millilitre
om2:colonyFormingUnitPer25Millilitre rdf:type owl:NamedIndividual ,
om2:VolumetricViableCountUnit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/colonyFormingUnitPerGram
om2:colonyFormingUnitPerGram rdf:type owl:NamedIndividual ,
om2:SpecificViableCountUnit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/colonyFormingUnitPerMillilitre
om2:colonyFormingUnitPerMillilitre rdf:type owl:NamedIndividual ,
om2:VolumetricViableCountUnit .
### http://www.ontology-of-units-of-measure.org/resource/om-2/gram
om2:gram rdf:type owl:NamedIndividual ,
om2:Unit ;
rdfs:comment "The gram is a unit of mass defined as 1.0e-3 kilogram."@en ;
rdfs:label "gram"@en ,
"gram"@nl ,
"克"@zh .
### http://www.ontology-of-units-of-measure.org/resource/om-2/kilogram
om2:kilogram rdf:type owl:NamedIndividual ,
om2:Unit ;
rdfs:comment "The kilogram is a unit of mass defined as the mass of the international prototype of the kilogram."@en ,
"The tonne is a unit of mass defined as 1000 kilogram."@en ;
rdfs:label "kilogram"@en ,
"kilogram"@nl ,
"ton"@nl ,
"tonne"@en ,
"公吨"@zh ,
"公斤"@zh .
### http://www.ontology-of-units-of-measure.org/resource/om-2/log10
om2:log10 rdf:type owl:NamedIndividual ,
om2:Function ;
om2:alternativeLabel "50th percentile"@en ;
rdfs:label "log10"@en .
### http://www.ontology-of-units-of-measure.org/resource/om-2/median
om2:median rdf:type owl:NamedIndividual ,
om2:Function ;
om2:alternativeLabel "50th percentile"@en ;
rdfs:label "median"@en .
### http://www.ontology-of-units-of-measure.org/resource/om-2/tonne
om2:tonne rdf:type owl:NamedIndividual .
### http://www.purl.org/infection_trans#AirFilter
:AirFilter rdf:type owl:NamedIndividual ,
:SampleType .
### http://www.purl.org/infection_trans#Death
:Death rdf:type owl:NamedIndividual ,
:ObservationType .
### http://www.purl.org/infection_trans#EnvironmentalSample
:EnvironmentalSample rdf:type owl:NamedIndividual ,
:SampleType .
### http://www.purl.org/infection_trans#Swab
:Swab rdf:type owl:NamedIndividual ,
:SampleType .
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi