From 8ee42b78822b70cf1690991cf08e37ef0cb8d247 Mon Sep 17 00:00:00 2001 From: Alec Chapman Date: Wed, 28 Feb 2024 23:01:42 -0700 Subject: [PATCH] Add complete notebooks --- docs/index.html | 12 ++++----- docs/search.json | 2 +- index.qmd | 70 ++++++++++++++++++++++++------------------------ 3 files changed, 42 insertions(+), 42 deletions(-) diff --git a/docs/index.html b/docs/index.html index 5464e3c..45bc65a 100644 --- a/docs/index.html +++ b/docs/index.html @@ -171,7 +171,7 @@

Schedule

Python Review

0. Roadmap

1. Python Essentials

- +1. Python Essentials 9:00 am @@ -183,13 +183,13 @@

Schedule

9:30 am Working with text in Python 2. String Methods - +2. String Methods 10:00 am Regular expressions 3. Regular Expressions - +3. Regular Expressions 10:30 am @@ -201,13 +201,13 @@

Schedule

10:45 am Rule-based NLP and medspaCy 4. Rule-based NLP with medspaCy - +4. Rule-based NLP with medspaCy 11:30 am Attribute Detection 5. Attribute Detection - +5. Attribute Detection 12:00 pm @@ -219,7 +219,7 @@

Schedule

1:00 pm Pneumonia classification 6. Pneumonia Classification - +6. Pneumonia Classification 1:45 pm diff --git a/docs/search.json b/docs/search.json index a55ff1e..d030b34 100644 --- a/docs/search.json +++ b/docs/search.json @@ -18,6 +18,6 @@ "href": "index.html#schedule", "title": "Introduction to Natural Language Processing with Applications to Clinical Data Science", "section": "Schedule", - "text": "Schedule\n\n\n\nTime\nTopic\nNotebook\nNotebook (complete)\n\n\n\n\nBefore Workshop\nPython Review\n0. Roadmap\n1. Python Essentials\n\n\n\n9:00 am\nIntroduction and Setup\n\n\n\n\n9:30 am\nWorking with text in Python\n2. String Methods\n\n\n\n10:00 am\nRegular expressions\n3. Regular Expressions\n\n\n\n10:30 am\nMorning Break\n\n\n\n\n10:45 am\nRule-based NLP and medspaCy\n4. Rule-based NLP with medspaCy\n\n\n\n11:30 am\nAttribute Detection\n5. Attribute Detection\n\n\n\n12:00 pm\nLunch\n\n\n\n\n1:00 pm\nPneumonia classification\n6. Pneumonia Classification\n\n\n\n1:45 pm\nIntroduction to machine learning NLP\n\n\n\n\n2:00 pm\nPre-training a LLM from scratch\n\n\n\n\n2:30 pm\nAfternoon Break\n\n\n\n\n2:45 pm\nFine-tuning a LLM for classification\n\n\n\n\n3:30 pm\nWrap-Up and Resources\n\n\n\n\n4:00 pm\nEnd" + "text": "Schedule\n\n\n\nTime\nTopic\nNotebook\nNotebook (complete)\n\n\n\n\nBefore Workshop\nPython Review\n0. Roadmap\n1. Python Essentials\n1. Python Essentials\n\n\n9:00 am\nIntroduction and Setup\n\n\n\n\n9:30 am\nWorking with text in Python\n2. String Methods\n2. String Methods\n\n\n10:00 am\nRegular expressions\n3. Regular Expressions\n3. Regular Expressions\n\n\n10:30 am\nMorning Break\n\n\n\n\n10:45 am\nRule-based NLP and medspaCy\n4. Rule-based NLP with medspaCy\n4. Rule-based NLP with medspaCy\n\n\n11:30 am\nAttribute Detection\n5. Attribute Detection\n5. Attribute Detection\n\n\n12:00 pm\nLunch\n\n\n\n\n1:00 pm\nPneumonia classification\n6. Pneumonia Classification\n6. Pneumonia Classification\n\n\n1:45 pm\nIntroduction to machine learning NLP\n\n\n\n\n2:00 pm\nPre-training a LLM from scratch\n\n\n\n\n2:30 pm\nAfternoon Break\n\n\n\n\n2:45 pm\nFine-tuning a LLM for classification\n\n\n\n\n3:30 pm\nWrap-Up and Resources\n\n\n\n\n4:00 pm\nEnd" } ] \ No newline at end of file diff --git a/index.qmd b/index.qmd index 2276d41..501a431 100644 --- a/index.qmd +++ b/index.qmd @@ -31,38 +31,38 @@ subtitle: "University of Utah" ## Schedule -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| Time | Topic | Notebook | Notebook (complete) | -+================:+:=====================================+:==========================================================================================================================+=====================+ -| Before Workshop | Python Review | [0. Roadmap](https://colab.research.google.com/drive/1_CfgEjKbtuzsAnYqzD0as69DrHwvJrpJ#scrollTo=c12d4144) | | -| | | | | -| | | [1. Python Essentials](https://colab.research.google.com/drive/166hhooUtm7bxdy322HPPhVQFRZgmFkkr#scrollTo=ca0420ec) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 9:00 am | Introduction and Setup | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 9:30 am | Working with text in Python | [2. String Methods](https://colab.research.google.com/drive/116VhAbGLS8cs1pr--9YUK7Lg1wzLHDn_#scrollTo=ce9cc737) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 10:00 am | Regular expressions | [3. Regular Expressions](https://colab.research.google.com/drive/1VgJyIze2_u1rqLNIMlfIZ_PCK96tsRzt#scrollTo=M97tFBnmZf9F) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 10:30 am | Morning Break | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 10:45 am | Rule-based NLP and medspaCy | [4. Rule-based NLP with medspaCy](https://colab.research.google.com/drive/13Vd-CSkN4FctzFq7k4fgLcSpol15D3ij) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 11:30 am | Attribute Detection | [5. Attribute Detection](https://colab.research.google.com/drive/1XvBDccJNiT8hp1022IPBUk6yu76mHv-q) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 12:00 pm | Lunch | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 1:00 pm | Pneumonia classification | [6. Pneumonia Classification](https://colab.research.google.com/drive/1wRd0ZNrU-MUywpv95Ywf30Z-Hy34PqW0) | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 1:45 pm | Introduction to machine learning NLP | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 2:00 pm | Pre-training a LLM from scratch | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 2:30 pm | Afternoon Break | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 2:45 pm | Fine-tuning a LLM for classification | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 3:30 pm | Wrap-Up and Resources | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ -| 4:00 pm | End | | | -+-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+---------------------+ ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| Time | Topic | Notebook | Notebook (complete) | ++================:+:=====================================+:==========================================================================================================================+==============================================================================================================+ +| Before Workshop | Python Review | [0. Roadmap](https://colab.research.google.com/drive/1_CfgEjKbtuzsAnYqzD0as69DrHwvJrpJ#scrollTo=c12d4144) | [1. Python Essentials](https://colab.research.google.com/drive/1zoZWb54DWyfUSzwjcDi6pSHOumzI7fpO) | +| | | | | +| | | [1. Python Essentials](https://colab.research.google.com/drive/166hhooUtm7bxdy322HPPhVQFRZgmFkkr#scrollTo=ca0420ec) | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 9:00 am | Introduction and Setup | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 9:30 am | Working with text in Python | [2. String Methods](https://colab.research.google.com/drive/116VhAbGLS8cs1pr--9YUK7Lg1wzLHDn_#scrollTo=ce9cc737) | [2. String Methods](https://colab.research.google.com/drive/1RvHU0aQmt9RUzpmmCf9D7yMllt0ogoN2) | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 10:00 am | Regular expressions | [3. Regular Expressions](https://colab.research.google.com/drive/1VgJyIze2_u1rqLNIMlfIZ_PCK96tsRzt#scrollTo=M97tFBnmZf9F) | [3. Regular Expressions](https://colab.research.google.com/drive/177DNaZR_87VRKk21JQPdo7LbqXg_85gP) | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 10:30 am | Morning Break | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 10:45 am | Rule-based NLP and medspaCy | [4. Rule-based NLP with medspaCy](https://colab.research.google.com/drive/13Vd-CSkN4FctzFq7k4fgLcSpol15D3ij) | [4. Rule-based NLP with medspaCy](https://colab.research.google.com/drive/1huBxC9nVnE-LRXsv7qQmYXm5NBHdDkfY) | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 11:30 am | Attribute Detection | [5. Attribute Detection](https://colab.research.google.com/drive/1XvBDccJNiT8hp1022IPBUk6yu76mHv-q) | [5. Attribute Detection](https://colab.research.google.com/drive/1OAipGYicIJaL-nLz-_NtLGzd_DgEn9tp) | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 12:00 pm | Lunch | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 1:00 pm | Pneumonia classification | [6. Pneumonia Classification](https://colab.research.google.com/drive/1wRd0ZNrU-MUywpv95Ywf30Z-Hy34PqW0) | [6. Pneumonia Classification](https://colab.research.google.com/drive/1bAEcZU-fXHVaPXLmlME5iRqsTvwEw2Xc) | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 1:45 pm | Introduction to machine learning NLP | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 2:00 pm | Pre-training a LLM from scratch | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 2:30 pm | Afternoon Break | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 2:45 pm | Fine-tuning a LLM for classification | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 3:30 pm | Wrap-Up and Resources | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+ +| 4:00 pm | End | | | ++-----------------+--------------------------------------+---------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------------------------------------------+