nb_refresh.yml

name: Update Notebook

on:
  pull_request:
    branches:
      [main]
  schedule:
    - cron: '15 2 5 * *'
  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

jobs:
  notebook_update:

    runs-on: ubuntu-latest

    steps:
      - name: Checkout repo
        uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: 3.11
      - name: Update pip and install depends
        run: |
          python -VV
          python -m pip install --upgrade pip
          python -m pip install --no-deps .
          pip install -r requirements.txt
          pip install jupyter nbconvert nbformat
      - name: Update analysis notebook
        run: |
          jupyter nbconvert --to notebook --execute demos/Harmonize_CapeCod_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_CapeCod_Detailed
          jupyter nbconvert --to notebook --execute demos/Harmonize_CapeCod_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_CapeCod_Simple
          jupyter nbconvert --to notebook --execute demos/Harmonize_Pensacola_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Pensacola_Detailed
          jupyter nbconvert --to notebook --execute demos/Harmonize_Pensacola_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Pensacola_Simple
          jupyter nbconvert --to notebook --execute demos/Harmonize_Tampa_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Tampa_Detailed
          jupyter nbconvert --to notebook --execute demos/Harmonize_Tampa_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Tampa_Simple
      - name: commit updated notebook
        uses: EndBug/add-and-commit@v9
        with:
          author_name: 'github-actions[bot]'
          author_email: 'github-actions[bot]@users.noreply.github.com'
          message: "Update Notebook"
          add: '["demos/Harmonize_CapeCod_Detailed.ipynb", "demos/Harmonize_CapeCod_Simple.ipynb", "demos/Harmonize_Pensacola_Detailed.ipynb", "demos/Harmonize_Pensacola_Simple.ipynb", "demos/Harmonize_Tampa_Detailed.ipynb","demos/Harmonize_Tampa_Simple.ipynb"]'