cluster.json

{
        "__default__" :
        {
                "time" : "02:00:00",
                "cpus": 1,
                "memory": "15G",
                jobname: "{rule}.{wildcards}",
                "partition": "hbfraser,hns,owners",
                "torque_queue": "batch"
        },
        "get_sra":
        {
                "time": "18:00:00",
        },
        "call_variants":{
                "cpus": 16,
                "time": "6:00:00",

        },
        "dedup" :
        {
                "time": "12:00:00",
                "memory": "64G",
        },
        "map_gdna":
        {
                "time": "1-00:00:00",
                "cpus": 12,
                "memory": "60G",

        },
        "star_map" :
        {
                "time" : "01:00:00",
                "cpus": 16,
                "memory": "30G"
        },
        "wasp_remap":
        {
                "time": "4:00:00",
                "cpus": 16,
                "memory": "60G",
        },
        "wasp_keep":
        {
                "time": "2:00:00", "memory": "20G",
        },
        "wasp_find_snps":
        {
                "time": "5:00:00",
        },
        "sample_expr":
        {
            "cpus": 8,

        },
        "true_hets":
        {
            "time": "4:00:00",
            "cpus": 16,
            "memory": "30G",
        },
}