-
Notifications
You must be signed in to change notification settings - Fork 3
/
setup.py
52 lines (44 loc) · 1.6 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
"""ASEr Setup Script."""
from setuptools import setup, find_packages
from codecs import open
from os import path
from os import listdir
here = path.abspath(path.dirname(__file__))
# Get the long description from the README file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
long_description = f.read()
# Generate a list of python scripts
scpts = []
for i in listdir(here + '/bin'):
if i.endswith('.py'):
scpts.append('bin/' + i)
setup(
name='ASEr',
version='0.3.0',
description='Get ASE counts from BAMs or raw fastq data -- repackage of pipeline by Carlo Artieri ',
long_description=long_description,
url='https://github.com/MikeDacre/ASEr',
author='Michael Dacre',
author_email='[email protected]',
license='MIT',
# See https://pypi.python.org/pypi?%3Aaction=list_classifiers
classifiers=[
'Development Status :: 3 - Beta',
'Intended Audience :: Science/Research',
'Environment :: Console',
'Operating System :: Linux',
'Natural Language :: English',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 2.6',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
],
keywords='ASE allele-specific expression RNA-seq fastq BAM SAM SNP',
install_requires=['pybedtools', 'pysam'],
scripts=scpts,
packages=['ASEr']
)