!!! NOTE: the latest OMBlast has been integrated into OMTools. Please download/clone OMBlast from OMTools !!!
An alignment tool for optical mapping data
Please refer to "OMBlastManual.pdf" for more details.
- Compile the OMBlast package in the OMBlast folder: javac -d bin -sourcepath src -cp "lib/*" @classes
- Build a runnable jar file for OMBlast: jar cvfm OMBlast.jar manifest -C bin .
- Run OMBlast: java -jar OMBlast.jar
- Run other scripts: (Linux) java -cp “bin:lib/” aldenjava.script.ScriptName (Windows) java -cp “bin;lib/” aldenjava.script.ScriptName