diff --git a/Manifest.toml b/Manifest.toml index ab3ada6..f45d45e 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -226,9 +226,9 @@ uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea" version = "0.1.4" [[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" +version = "0.1.9" [[deps.BitIntegers]] deps = ["Random"] @@ -281,15 +281,15 @@ version = "0.10.14" [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "dc172b558adbf17952001e15cf0d6364e6d78c2f" +git-tree-sha1 = "c48f9da18efd43b6b7adb7ee1f93fe5f2926c339" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.8.1+0" +version = "0.9.0+0" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "4a705770c2ad5469cc4499fde821b2bbd6802201" +git-tree-sha1 = "bcba305388e16aa5c879e896726db9e71b4942c6" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.13.0+2" +version = "0.14.0+1" [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] @@ -298,10 +298,10 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "d69c7593fe9d7d617973adcbe4762028c6899b2c" +deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "3441d68ea63944a2b9b6de76603ec1c8b0fd4e3e" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.11.11" +version = "0.12.3" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -342,15 +342,15 @@ version = "0.1.15" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +git-tree-sha1 = "227985d885b4dbce5e18a96f9326ea1e836e5a03" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.66.0" +version = "1.69.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.23.0" +version = "1.24.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -388,9 +388,9 @@ version = "0.7.4" [[deps.CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] -git-tree-sha1 = "23373fecba848397b1705f6183188a0c0bc86917" +git-tree-sha1 = "0d0612d8646ed6157adaceff420b3bacbc2510a9" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" -version = "0.8.2" +version = "0.8.3" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -599,9 +599,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.108" +version = "0.25.109" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -683,14 +683,14 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" [[deps.ExproniconLite]] -git-tree-sha1 = "6091a6fc0f16639f43d7f78fee225ba365712612" +git-tree-sha1 = "4627945941758db441d197192f228cd854700ef9" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.8" +version = "0.10.10" [[deps.Extents]] -git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c" +git-tree-sha1 = "94997910aca72897524d2237c41eb852153b0f65" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.2" +version = "0.1.3" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] @@ -779,9 +779,9 @@ version = "0.8.5" [[deps.Flux]] deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" +git-tree-sha1 = "edacf029ed6276301e455e34d7ceeba8cc34078a" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.15" +version = "0.14.16" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -842,9 +842,9 @@ version = "1.0.14+0" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.10" +version = "0.4.11" [[deps.Future]] deps = ["Random"] @@ -923,15 +923,15 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f2b57488ac7ee16124396de4f2bbdd51b2602ad" +git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.0" +version = "1.11.1" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "6f93a83ca11346771a93bbde2bdad2f65b61498f" +git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.10.2" +version = "0.11.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1050,9 +1050,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[deps.Inflate]] -git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" +git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.4" +version = "0.1.5" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -1061,9 +1061,13 @@ version = "0.3.1" [[deps.InlineStrings]] deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "86356004f30f8e737eff143d57d41bd580e437aa" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.1" +weakdeps = ["ArrowTypes"] + + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1080,18 +1084,16 @@ deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArr git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.15.1" +weakdeps = ["Unitful"] [deps.Interpolations.extensions] InterpolationsUnitfulExt = "Unitful" - [deps.Interpolations.weakdeps] - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - [[deps.IntervalArithmetic]] deps = ["CRlibm_jll", "MacroTools", "RoundingEmulator"] -git-tree-sha1 = "e75c4e33afbc631aa62671ebba12863321c1d46e" +git-tree-sha1 = "433b0bb201cd76cb087b017e49244f10394ebe9c" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "0.22.12" +version = "0.22.14" weakdeps = ["DiffRules", "ForwardDiff", "RecipesBase"] [deps.IntervalArithmetic.extensions] @@ -1206,9 +1208,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +git-tree-sha1 = "b8fcefe4418e4a7a2c3aaac883fecddd8efbe286" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.19" +version = "0.9.21" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -1365,9 +1367,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearMaps]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9948d6f8208acfebc3e8cf4681362b2124339e7e" +git-tree-sha1 = "ee79c3208e55786de58f8dcccca098ced79f743f" uuid = "7a12625a-238d-50fd-b39a-03d52299707e" -version = "3.11.2" +version = "3.11.3" weakdeps = ["ChainRulesCore", "SparseArrays", "Statistics"] [deps.LinearMaps.extensions] @@ -1377,9 +1379,9 @@ weakdeps = ["ChainRulesCore", "SparseArrays", "Statistics"] [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.27" +version = "0.3.28" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1437,21 +1439,21 @@ version = "0.5.1" [[deps.MLJ]] deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBalancing", "MLJBase", "MLJEnsembles", "MLJFlow", "MLJIteration", "MLJModels", "MLJTuning", "OpenML", "Pkg", "ProgressMeter", "Random", "Reexport", "ScientificTypes", "StatisticalMeasures", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "c6f89d9fe1fb8872d72424b060a94f00f569b2dd" +git-tree-sha1 = "bd2072e9cd65be0a3cb841f3d8cda1d2cacfe5db" uuid = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7" -version = "0.20.4" +version = "0.20.5" [[deps.MLJBalancing]] deps = ["MLJBase", "MLJModelInterface", "MLUtils", "OrderedCollections", "Random", "StatsBase"] -git-tree-sha1 = "f02e28f9f3c54a138db12a97a5d823e5e572c2d6" +git-tree-sha1 = "f707a01a92d664479522313907c07afa5d81df19" uuid = "45f359ea-796d-4f51-95a5-deb1a414c586" -version = "0.1.4" +version = "0.1.5" [[deps.MLJBase]] deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LearnAPI", "LinearAlgebra", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "RecipesBase", "Reexport", "ScientificTypes", "Serialization", "StatisticalMeasuresBase", "StatisticalTraits", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "aba2ffd56a9a97027b4102055dd9f909a6e35d12" +git-tree-sha1 = "b81fe8aaf3a253d76d915ab6d6f749ab9c9973f6" uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d" -version = "1.3.0" +version = "1.5.0" weakdeps = ["StatisticalMeasures"] [deps.MLJBase.extensions] @@ -1459,15 +1461,15 @@ weakdeps = ["StatisticalMeasures"] [[deps.MLJEnsembles]] deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Distributed", "Distributions", "MLJModelInterface", "ProgressMeter", "Random", "ScientificTypesBase", "StatisticalMeasuresBase", "StatsBase"] -git-tree-sha1 = "d3dd87194ec96892bb243b65225a462c7ab16e66" +git-tree-sha1 = "84a5be55a364bb6b6dc7780bbd64317ebdd3ad1e" uuid = "50ed68f4-41fd-4504-931a-ed422449fee0" -version = "0.4.2" +version = "0.4.3" [[deps.MLJFlow]] deps = ["MLFlowClient", "MLJBase", "MLJModelInterface"] -git-tree-sha1 = "bf6971039452c5f8b95e4334273f6725f4bb931e" +git-tree-sha1 = "508bff8071d7d1902d6f1b9d1e868d58821f1cfe" uuid = "7b7b8358-b45c-48ea-a8ef-7ca328ad328f" -version = "0.4.2" +version = "0.5.0" [[deps.MLJGLMInterface]] deps = ["Distributions", "GLM", "MLJModelInterface", "StatsModels", "Tables"] @@ -1477,9 +1479,9 @@ version = "0.3.7" [[deps.MLJIteration]] deps = ["IterationControl", "MLJBase", "Random", "Serialization"] -git-tree-sha1 = "1e909ee09417ebd18559c4d9c15febff887192df" +git-tree-sha1 = "f93f381a82fc1768c1a99c27a84b7ea1b1ee186d" uuid = "614be32b-d00c-4edb-bd02-1eb411ab5e55" -version = "0.6.1" +version = "0.6.2" [[deps.MLJLinearModels]] deps = ["DocStringExtensions", "IterativeSolvers", "LinearAlgebra", "LinearMaps", "MLJModelInterface", "Optim", "Parameters"] @@ -1489,9 +1491,9 @@ version = "0.10.0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +git-tree-sha1 = "88ef480f46e0506143681b3fb14d86742f3cecb1" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.6" +version = "1.10.0" [[deps.MLJModels]] deps = ["CategoricalArrays", "CategoricalDistributions", "Combinatorics", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "Markdown", "OrderedCollections", "Parameters", "Pkg", "PrettyPrinting", "REPL", "Random", "RelocatableFolders", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"] @@ -1501,9 +1503,9 @@ version = "0.16.17" [[deps.MLJTuning]] deps = ["ComputationalResources", "Distributed", "Distributions", "LatinHypercubeSampling", "MLJBase", "ProgressMeter", "Random", "RecipesBase", "StatisticalMeasuresBase"] -git-tree-sha1 = "91657c168876866f439afddaa59089d54c22b0cd" +git-tree-sha1 = "97f959ae512736b02c69a08af45afc5321bcef91" uuid = "03970b2e-30c4-11ea-3135-d1576263f10f" -version = "0.8.5" +version = "0.8.7" [[deps.MLJXGBoostInterface]] deps = ["MLJModelInterface", "SparseArrays", "Tables", "XGBoost"] @@ -1536,9 +1538,9 @@ version = "0.1.11" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "ce0ca3dd147c43de175c5aff161315a424f4b8ac" +git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.3+1" +version = "5.4.0+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1547,16 +1549,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "4d49c9ee830eec99d3e8de2425ff433ece7cc1bc" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "e11b0666b457e3bb60119f2ed4d063d2b68954d3" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.20.10" +version = "0.21.3" [[deps.MakieCore]] -deps = ["Observables", "REPL"] -git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" +deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] +git-tree-sha1 = "638bc817096742e8302f7b0b972ee5701fe00e97" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.7.3" +version = "0.8.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1646,9 +1648,9 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" +git-tree-sha1 = "78de319bce99d1d8c1d4fe5401f7cfc2627df396" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.17" +version = "0.9.18" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1762,9 +1764,9 @@ version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+1" +version = "3.0.14+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1924,9 +1926,9 @@ version = "0.4.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.1" +version = "2.3.2" [[deps.Printf]] deps = ["Unicode"] @@ -1945,9 +1947,9 @@ uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" [[deps.PtrArrays]] -git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +git-tree-sha1 = "f011fbb92c4d401059b2212c05c0601b70f8b759" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.1.0" +version = "1.2.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -2071,9 +2073,9 @@ version = "0.6.42" [[deps.SQLite]] deps = ["DBInterface", "Random", "SQLite_jll", "Serialization", "Tables", "WeakRefStrings"] -git-tree-sha1 = "eb9a473c9b191ced349d04efa612ec9f39c087ea" +git-tree-sha1 = "38b82dbc52b7db40bea182688c7a1103d06948a4" uuid = "0aa819cd-b072-5ff4-a722-6bc24af294d9" -version = "1.6.0" +version = "1.6.1" [[deps.SQLite_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2100,9 +2102,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.2" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2247,9 +2249,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" +git-tree-sha1 = "6e00379a24597be4ae1ee6b2d882e15392040132" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.4" +version = "1.9.5" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2257,9 +2259,9 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.3" [[deps.StatisticalMeasures]] deps = ["CategoricalArrays", "CategoricalDistributions", "Distributions", "LearnAPI", "LinearAlgebra", "MacroTools", "OrderedCollections", "PrecompileTools", "ScientificTypesBase", "StatisticalMeasuresBase", "Statistics", "StatsBase"] @@ -2283,9 +2285,9 @@ version = "0.1.1" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "983c41a0ddd6c19f5607ca87271d7c7620ab5d50" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.3.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2408,7 +2410,7 @@ version = "1.10.0" [[deps.TargeneCore]] deps = ["ArgParse", "Arrow", "BGEN", "CSV", "CairoMakie", "CategoricalArrays", "Combinatorics", "DataFrames", "Distributions", "HTTP", "JLD2", "JSON", "Mmap", "PackageCompiler", "Random", "Serialization", "SnpArrays", "StableRNGs", "Statistics", "TMLE", "TargetedEstimation", "YAML"] -git-tree-sha1 = "4e4726acf05c274d8f42dce1e3fd2e8f21dc5094" +git-tree-sha1 = "a367b6f432e37e964de4112fdf4b9869efa82145" repo-rev = "simulation" repo-url = "https://github.com/TARGENE/TargeneCore.jl" uuid = "3aa9512e-41c2-4133-bfaa-ba71048dd391" @@ -2451,9 +2453,9 @@ version = "0.10.0" [[deps.TimeZones]] deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +git-tree-sha1 = "a6ae8d7a27940c33624f8c7bde5528de21ba730d" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.15.0" +version = "1.17.0" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] @@ -2513,6 +2515,17 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.20.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2520,9 +2533,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "0.1.4" [[deps.VariantCallFormat]] deps = ["Automa", "BGZFStreams", "BioGenerics", "BufferedStreams"] @@ -2532,9 +2545,9 @@ version = "0.5.6" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "6129a4faf6242e7c3581116fbe3270f3ab17c90d" +git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.67" +version = "0.21.68" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -2641,9 +2654,9 @@ version = "1.5.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "e6330e4b731a6af7959673621e91645eb1356884" +git-tree-sha1 = "80c3218f29cbc47111ac87e7be5e69cc05c6dd36" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.9" +version = "0.4.11" [[deps.Zlib_jll]] deps = ["Libdl"]