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add metabolite and reaction annotations #2

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edkerk opened this issue Oct 24, 2017 · 2 comments
Open
1 of 3 tasks

add metabolite and reaction annotations #2

edkerk opened this issue Oct 24, 2017 · 2 comments
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@edkerk
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edkerk commented Oct 24, 2017 •
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Add more annotations (KEGG, ChEBI, lipidmaps, InChi) for all metabolites. Now we mostly rely on annotations from the yeast consensus network.

  • query latest yeast-GEM for new annotations
  • pass through MetaNetX to find additional annotations
  • evaluate alternative solutions, like ModelPolisher
@ChristianLieven
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You could try out https://github.com/draeger-lab/ModelPolisher for this.

@edkerk
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edkerk commented Apr 13, 2018

Thanks @ChristianLieven, will have a look at this!

@edkerk edkerk changed the title Additional annotations add metabolite and reaction annotations Jun 27, 2019
@edkerk edkerk mentioned this issue Apr 5, 2021
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@edkerk @ChristianLieven