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allow gene list export to Reactome enrichment analysis #52

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JTFouquier opened this issue May 10, 2016 · 0 comments
Open

allow gene list export to Reactome enrichment analysis #52

JTFouquier opened this issue May 10, 2016 · 0 comments

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@JTFouquier
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Reactome has a nice API for gene list enrichment analysis relative to their pathways. The API is documented here: http://www.reactome.org/AnalysisService/. Contact person is either Antonio Fabregat Mundo ([email protected]) or Henning Hermjakob.

An example application that uses this service is Intact (http://www.ebi.ac.uk/intact/).

  • search BRCA2
  • click "Lists" tab
  • select all
  • click "Pathways"

6-5-2015 10-28-23 AM.jpg

We should allow BioGPS users to send their gene lists to that service for enrichment analysis.


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