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The alias field should only contain exact synonyms, I hope we agree. GO's synonym field also contains NARROW, BROAD, and RELATED ones, besides EXACT. Unfortunately the bot adds all of them, also Wikipedia people added more unrelated stuff. I will now start purging all GO items of any alias that is not an EXACT GO synonym. But I ask you to please STOP re-adding any inexact ones again. --SCIdude (talk) 07:15, 11 December 2019 (UTC)
Seems like a good suggestion...
Confirmed that the different types of aliases are available in the source OWL file we use. For example, from the go.owl file:
<!-- http://purl.obolibrary.org/obo/GO_0000390 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000390">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0032988"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0000398"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disassembly of a spliceosomal complex with the ATP-dependent release of the product RNAs, one of which is composed of the joined exons. In cis splicing, the other product is the excised sequence, often a single intron, in a lariat structure.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0000391</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0000392</oboInOwl:hasAlternativeId>
<oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">spliceosome disassembly</oboInOwl:hasBroadSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">spliceosome complex disassembly</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">U12-type spliceosome disassembly</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">U2-type spliceosome disassembly</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0000390</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">spliceosomal complex disassembly</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0000390"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disassembly of a spliceosomal complex with the ATP-dependent release of the product RNAs, one of which is composed of the joined exons. In cis splicing, the other product is the excised sequence, often a single intron, in a lariat structure.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:krc</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0879695897</oboInOwl:hasDbXref>
</owl:Axiom>
The text was updated successfully, but these errors were encountered:
As I don't maintain a bot I tried to remove the inexact aliases using QS but removing aliases is not possible. So, would it be possible to include that with one of your normal runs?
per this comment:
Seems like a good suggestion...
Confirmed that the different types of aliases are available in the source OWL file we use. For example, from the go.owl file:
The text was updated successfully, but these errors were encountered: