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export_ddd20_hdf.py
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export_ddd20_hdf.py
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'''Export DDD20 recording to homogeneous format.
The DDD20 HDF recordings saves data in a custom format that
are not friendly to batch processing.
In this script, I modified the viewer script to export the data
into a newly created HDF5 that has nicer user experience.
Author: Yuhuang Hu
Email : [email protected]
Experimental viewer for DAVIS + OpenXC data
Author: J. Binas <[email protected]>, 2017
This software is released under the
GNU LESSER GENERAL PUBLIC LICENSE Version 3.
'''
from __future__ import print_function
import os
import argparse
from argparse import RawTextHelpFormatter
import numpy as np
import h5py
import cv2
import time
import Queue
import multiprocessing as mp
from interfaces.caer import DVS_SHAPE, unpack_header, unpack_data
CHUNK_SIZE = 128
DISPLAY = True # whether to turn on display. setting DISPLAY=False makes our lives easier in headless servers
# exported_h5_path = os.path.join(
# os.environ["HOME"], "data", "DDD19", "exported.h5")
# exported_data = h5py.File(exported_h5_path, "w")
# frame_data = exported_data.create_dataset(
# name="frame",
# shape=(0, 260, 346),
# maxshape=(None, 260, 346),
# dtype="uint8")
# frame_time = exported_data.create_dataset(
# name="frame_ts",
# shape=(0, 1),
# maxshape=(None, 1),
# dtype="float32")
# event_data = exported_data.create_dataset(
# name="event",
# shape=(0, 4),
# maxshape=(None, 4),
# dtype="uint32")
VIEW_DATA = {
'dvs',
'steering_wheel_angle',
'engine_speed',
'accelerator_pedal_position',
'brake_pedal_status',
'vehicle_speed',
}
# this changed in version 3
CV_AA = cv2.LINE_AA if int(cv2.__version__[0]) > 2 else cv2.CV_AA
def _flush_q(q):
''' flush queue '''
while True:
try:
q.get(timeout=1e-3)
except Queue.Empty:
if q.empty():
break
class HDF5Stream(mp.Process):
def __init__(self, filename, tables, bufsize=64):
super(HDF5Stream, self).__init__()
self.f = h5py.File(filename, 'r')
self.tables = tables
self.q = {k: mp.Queue(bufsize) for k in self.tables}
self.run_search = mp.Event()
self.exit = mp.Event()
self.done = mp.Event()
self.skip_to = mp.Value('L', 0)
self._init_count()
self._init_time()
self.daemon = True
self.start()
def run(self):
while self.blocks_rem and not self.exit.is_set():
blocks_read = 0
for k in self.blocks_rem.keys():
if self.q[k].full():
time.sleep(1e-6)
continue
i = self.block_offset[k]
self.q[k].put(self.f[k]['data'][i*CHUNK_SIZE:(i+1)*CHUNK_SIZE])
self.block_offset[k] += 1
if self.blocks_rem[k].value:
self.blocks_rem[k].value -= 1
else:
self.blocks_rem.pop(k)
blocks_read += 1
if not blocks_read:
time.sleep(1e-6)
if self.run_search.is_set():
self._search()
self.f.close()
print('closed input file')
while not self.exit.is_set():
time.sleep(1e-3)
# print('[DEBUG] flushing stream queues')
for k in self.q:
# print('[DEBUG] flushing', k)
_flush_q(self.q[k])
self.q[k].close()
self.q[k].join_thread()
# print('[DEBUG] flushed all stream queues')
self.done.set()
print('stream done')
def get(self, k, block=True, timeout=None):
return self.q[k].get(block, timeout)
def _init_count(self, offset={}):
self.block_offset = {k: offset.get(k, 0) / CHUNK_SIZE
for k in self.tables}
self.size = {k: len(self.f[k]['data']) - v * CHUNK_SIZE
for k, v in self.block_offset.items()}
self.blocks = {k: v / CHUNK_SIZE for k, v in self.size.items()}
self.blocks_rem = {
k: mp.Value('L', v) for k, v in self.blocks.items() if v}
def _init_time(self):
self.ts_start = {}
self.ts_stop = {}
self.ind_stop = {}
for k in self.tables:
ts_start = self.f[k]['timestamp'][self.block_offset[k]*CHUNK_SIZE]
self.ts_start[k] = mp.Value('L', ts_start)
b = self.block_offset[k] + self.blocks_rem[k].value - 1
while b > self.block_offset[k] and \
self.f[k]['timestamp'][b*CHUNK_SIZE] == 0:
b -= 1
print(k, 'final block:', b)
self.ts_stop[k] = mp.Value(
'L', self.f[k]['timestamp'][(b + 1) * CHUNK_SIZE - 1])
self.ind_stop[k] = b
def init_search(self, t):
''' start streaming from given time point '''
if self.run_search.is_set():
return
self.skip_to.value = np.uint64(t)
self.run_search.set()
def _search(self):
t = self.skip_to.value
offset = {k: self._bsearch_by_timestamp(k, t) for k in self.tables}
for k in self.tables:
_flush_q(self.q[k])
self._init_count(offset)
# self._init_time()
self.run_search.clear()
def _bsearch_by_timestamp(self, k, t):
'''performs binary search on timestamp, returns closest block index'''
l, r = 0, self.ind_stop[k]
print('searching', k, t)
while True:
if r - l < 2:
print('selecting block', l)
return l * CHUNK_SIZE
if self.f[k]['timestamp'][(l + (r - l) / 2) * CHUNK_SIZE] > t:
r = l + (r - l) / 2
else:
l += (r - l) / 2
class MergedStream(mp.Process):
''' Unpacks and merges data from HDF5 stream '''
def __init__(self, fbuf, bufsize=256):
super(MergedStream, self).__init__()
self.fbuf = fbuf
self.ts_start = self.fbuf.ts_start
self.ts_stop = self.fbuf.ts_stop
self.q = mp.Queue(bufsize)
self.run_search = mp.Event()
self.skip_to = mp.Value('L', 0)
self._init_state()
self.done = mp.Event()
self.fetched_all = mp.Event()
self.exit = mp.Event()
self.daemon = True
self.start()
def run(self):
while self.blocks_rem and not self.exit.is_set():
# find next event
if self.q.full():
time.sleep(1e-4)
continue
next_k = min(self.current_ts, key=self.current_ts.get)
self.q.put((self.current_ts[next_k], self.current_dat[next_k]))
self._inc_current(next_k)
# get new blocks if necessary
for k in {k for k in self.blocks_rem if self.i[k] == CHUNK_SIZE}:
self.current_blk[k] = self.fbuf.get(k)
self.i[k] = 0
if self.blocks_rem[k]:
self.blocks_rem[k] -= 1
else:
self.blocks_rem.pop(k)
self.current_ts.pop(k)
if self.run_search.is_set():
self._search()
self.fetched_all.set()
self.fbuf.exit.set()
while not self.fbuf.done.is_set():
time.sleep(1)
# print('[DEBUG] waiting for stream process')
while not self.exit.is_set():
time.sleep(1)
# print('[DEBUG] waiting for merger process')
_flush_q(self.q)
# print('[DEBUG] flushed merger q ->', self.q.qsize())
self.q.close()
self.q.join_thread()
# print('[DEBUG] joined merger q')
self.done.set()
def close(self):
self.exit.set()
def _init_state(self):
keys = self.fbuf.blocks_rem.keys()
self.blocks_rem = {k: self.fbuf.blocks_rem[k].value for k in keys}
self.current_blk = {k: self.fbuf.get(k) for k in keys}
self.i = {k: 0 for k in keys}
self.current_dat = {}
self.current_ts = {}
for k in keys:
self._inc_current(k)
def _inc_current(self, k):
''' get next event of given type and increment row pointer '''
row = self.current_blk[k][self.i[k]]
if k == 'dvs':
ts, d = caer_event_from_row(row)
else: # vi event
ts = row[0] * 1e-6
d = {'etype': k, 'timestamp': row[0], 'data': row[1]}
if not ts and k in self.current_ts:
self.current_ts.pop(k)
self.blocks_rem.pop(k)
return False
self.current_ts[k], self.current_dat[k] = ts, d
self.i[k] += 1
def get(self, block=False):
return self.q.get(block)
@property
def has_data(self):
return not (self.fetched_all.is_set() and self.q.empty())
@property
def tmin(self):
return self.ts_start['dvs'].value
@property
def tmax(self):
return self.ts_stop['dvs'].value
def search(self, t, block=True):
if self.run_search.is_set():
return
self.skip_to.value = np.uint64(t)
self.run_search.set()
def _search(self):
self.fbuf.init_search(self.skip_to.value)
while self.fbuf.run_search.is_set():
time.sleep(1e-6)
_flush_q(self.q)
self._init_state()
self.q.put((0, {'etype': 'timestamp_reset'}))
self.run_search.clear()
class Interface(object):
def __init__(self,
tmin=0, tmax=0,
search_callback=None,
update_callback=None,
create_callback=None,
destroy_callback=None):
self.tmin, self.tmax = tmin, tmax
self.search_callback = search_callback
self.update_callback = update_callback
self.create_callback = create_callback
self.destroy_callback = destroy_callback
def _set_t(self, t):
self.t_now = int(t - self.tmin)
if self.update_callback is not None:
self.update_callback(t)
def close(self):
if self.close_callback is not None:
self.close_callback
class Viewer(Interface):
''' Simple visualizer for events '''
def __init__(self, max_fps=40, zoom=1, rotate180=False, **kwargs):
super(Viewer, self).__init__(**kwargs)
self.zoom = zoom
if DISPLAY:
cv2.namedWindow('frame')
# tobi added from https://stackoverflow.com/questions/21810452/
# cv2-imshow-command-doesnt-work-properly-in-opencv-python/
# 24172409#24172409
cv2.startWindowThread()
cv2.namedWindow('polarity')
ox = 0
oy = 0
cv2.moveWindow('frame', ox, oy)
cv2.moveWindow('polarity', ox + int(448*self.zoom), oy)
self.set_fps(max_fps)
self.pol_img = 0.5 * np.ones(DVS_SHAPE)
self.t_now = 0
self.t_pre = {}
self.count = {}
self.cache = {}
self.font = cv2.FONT_HERSHEY_SIMPLEX
self.display_info = True
self.display_color = 0
self.playback_speed = 1. # seems to do nothing
self.rotate180 = rotate180
# sets contrast for full scale event count for white/black
self.dvs_contrast = 2
self.paused = False
def set_fps(self, max_fps):
self.min_dt = 1. / max_fps
def show(self, d, t=None):
if DISPLAY:
# handle keyboad input
key_pressed = cv2.waitKey(1) & 0xFF # http://www.asciitable.com/
if key_pressed != -1:
if key_pressed == ord('i'): # 'i' pressed
if self.display_color == 0:
self.display_color = 255
elif self.display_color == 255:
self.display_color = 0
self.display_info = not self.display_info
print('rotated car info display')
elif key_pressed == ord('x'): # exit
print('exiting from x key')
raise SystemExit
elif key_pressed == ord('f'): # f (faster) key pressed
self.min_dt = self.min_dt*1.2
print('increased min_dt to ', self.min_dt, ' s')
# self.playback_speed = min(self.playback_speed + 0.2, 5.0)
# print('increased playback speed to ',self.playback_speed)
elif key_pressed == ord('s'): # s (slower) key pressed
self.min_dt = self.min_dt/1.2
print('decreased min_dt to ', self.min_dt, ' s')
# self.playback_speed = max(self.playback_speed - 0.2, 0.2)
# print('decreased playback speed to ',self.playback_speed)
elif key_pressed == ord('b'): # brighter
self.dvs_contrast = max(1, self.dvs_contrast-1)
print('increased DVS contrast to ', self.dvs_contrast,
' full scale event count')
elif key_pressed == ord('d'): # brighter
self.dvs_contrast = self.dvs_contrast+1
print('decreased DVS contrast to ', self.dvs_contrast,
' full scale event count')
elif key_pressed == ord(' '): # toggle paused
self.paused = not self.paused
print('decreased DVS contrast to ', self.dvs_contrast,
' full scale event count')
if self.paused:
while True:
key_paused = cv2.waitKey(1) or 0xff
if key_paused == ord(' '):
self.paused = False
break
''' receive and handle single event '''
if 'etype' not in d:
d['etype'] = d['name']
etype = d['etype']
if not self.t_pre.get(etype):
self.t_pre[etype] = -1
self.count[etype] = self.count.get(etype, 0) + 1
if etype == 'frame_event' and \
time.time() - self.t_pre[etype] > self.min_dt:
if 'data' not in d:
unpack_data(d)
img = (d['data'] / 256).astype(np.uint8)
print("Frame {} {} {}".format(
img.shape, img.dtype, d["timestamp"]))
frame_data.resize(frame_data.shape[0]+1, axis=0)
frame_time.resize(frame_time.shape[0]+1, axis=0)
frame_data[-1] = img
frame_time[-1, 0] = d["timestamp"]
exported_data.flush()
del d
# if self.rotate180 is True:
# # grab the dimensions of the image and calculate the center
# # of the image
# (h, w) = img.shape[:2]
# center = (w / 2, h / 2)
#
# # rotate the image by 180 degrees
# M = cv2.getRotationMatrix2D(center, 180, 1.0)
# img = cv2.warpAffine(img, M, (w, h))
# if self.display_info:
# self._plot_steering_wheel(img)
# self._print(img, (50, 220), 'accelerator_pedal_position', '%')
# self._print(img, (100, 220), 'brake_pedal_status',
# 'brake', True)
# self._print(img, (200, 220), 'vehicle_speed', 'km/h')
# self._print(img, (300, 220), 'engine_speed', 'rpm')
# if t is not None:
# self._plot_timeline(img)
# if self.zoom != 1:
# img = cv2.resize(
# img, None, fx=self.zoom, fy=self.zoom,
# interpolation=cv2.INTER_CUBIC)
# cv2.imshow('frame', img)
# cv2.waitKey(1)
self.t_pre[etype] = time.time()
elif etype == 'polarity_event':
if 'data' not in d:
unpack_data(d)
print("Event data {} {} {}".format(
d["data"].shape, d["data"].dtype, d["timestamp"]))
event_data.resize(event_data.shape[0]+d["data"].shape[0], axis=0)
event_data[-d["data"].shape[0]:] = d["data"]
exported_data.flush()
del d
# makes DVS image, but only from latest message
# self.pol_img[d['data'][:, 2], d['data'][:, 1]] += \
# (d['data'][:, 3]-.5)/self.dvs_contrast
# if time.time() - self.t_pre[etype] > self.min_dt:
# if self.zoom != 1:
# self.pol_img = cv2.resize(
# self.pol_img, None,
# fx=self.zoom, fy=self.zoom,
# interpolation=cv2.INTER_CUBIC)
# if self.rotate180 is True:
# # grab the dimensions of the image and
# # calculate the center
# # of the image
# (h, w) = self.pol_img.shape[:2]
# center = (w / 2, h / 2)
#
# # rotate the image by 180 degrees
# M = cv2.getRotationMatrix2D(center, 180, 1.0)
# self.pol_img = cv2.warpAffine(self.pol_img, M, (w, h))
# if self.display_info:
# self._print_string(self.pol_img, (25, 25), "%.2fms"%(self.min_dt*1000))
# cv2.imshow('polarity', self.pol_img)
# # cv2.waitKey(1)
# self.pol_img = 0.5 * np.ones(DVS_SHAPE)
self.t_pre[etype] = time.time()
elif etype in VIEW_DATA:
if 'data' not in d:
d['data'] = d['value']
self.cache[etype] = d['data']
self.t_pre[etype] = time.time()
if t is not None:
self._set_t(t)
def _plot_steering_wheel(self, img):
if 'steering_wheel_angle' not in self.cache:
return
c, r = (173, 130), 65 # center, radius
a = self.cache['steering_wheel_angle']
a_rad = + a / 180. * np.pi + np.pi / 2
if self.rotate180:
a_rad = np.pi-a_rad
t = (c[0] + int(np.cos(a_rad) * r), c[1] - int(np.sin(a_rad) * r))
cv2.line(img, c, t, self.display_color, 2, CV_AA)
cv2.circle(img, c, r, self.display_color, 1, CV_AA)
cv2.line(img, (c[0]-r+5, c[1]), (c[0]-r, c[1]),
self.display_color, 1, CV_AA)
cv2.line(img, (c[0]+r-5, c[1]), (c[0]+r, c[1]),
self.display_color, 1, CV_AA)
cv2.line(img, (c[0], c[1]-r+5), (c[0], c[1]-r),
self.display_color, 1, CV_AA)
cv2.line(img, (c[0], c[1]+r-5), (c[0], c[1]+r),
self.display_color, 1, CV_AA)
cv2.putText(
img, '%0.1f deg' % a,
(c[0]-35, c[1]+30), self.font, 0.4, self.display_color, 1, CV_AA)
def _print(self, img, pos, name, unit, autohide=False):
if name not in self.cache:
return
v = self.cache[name]
if autohide and v == 0:
return
cv2.putText(
img, '%d %s' % (v, unit),
(pos[0]-40, pos[1]+20), self.font, 0.4,
self.display_color, 1, CV_AA)
def _print_string(self, img, pos, string):
cv2.putText(
img, '%s' % string,
(pos[0], pos[1]), self.font, 0.4, self.display_color, 1, CV_AA)
def _plot_timeline(self, img):
pos = (50, 10)
p = int(346 * self.t_now / (self.tmax - self.tmin))
cv2.line(img, (0, 2), (p, 2), 255, 1, CV_AA)
cv2.putText(
img, '%d s' % self.t_now,
(pos[0]-40, pos[1]+20), self.font, 0.4, self.display_color, 1, CV_AA)
def close(self):
cv2.destroyAllWindows()
class Controller(Interface):
def __init__(self, filename, **kwargs):
super(Controller, self).__init__(**kwargs)
global DISPLAY
self.display = DISPLAY
if self.display:
cv2.namedWindow('control')
cv2.moveWindow('control', 400, 698)
self.f = h5py.File(filename, 'r')
self.tmin, self.tmax = self._get_ts()
self.len = int(self.tmax - self.tmin) + 1
img = np.zeros((100, self.len))
self.plot_pixels(img, 'headlamp_status', 0, 10)
self.plot_line(img, 'steering_wheel_angle', 20, 30)
self.plot_line(img, 'vehicle_speed', 69, 30)
self.width = 978
self.img = cv2.resize(
img, (self.width, 100), interpolation=cv2.INTER_NEAREST)
if self.display:
cv2.setMouseCallback('control', self._set_search)
self.t_pre = 0
self.update(0)
self.f.close()
def update(self, t):
self._set_t(t)
t = int(float(self.width) / self.len * (t - self.tmin))
if t == self.t_pre:
return
self.t_pre = t
img = self.img.copy()
img[:, :t+1] = img[:, :t+1] * 0.5 + 0.5
if self.display:
cv2.imshow('control', img)
cv2.waitKey(1)
def plot_line(self, img, name, offset, height):
x, y = self.get_xy(name)
if x is None:
return
y -= y.min()
y = y / y.max() * height
x = x.clip(0, self.len - 1)
img[offset+height-y.astype(int), x] = 1
def plot_pixels(self, img, name, offset=0, height=1):
x, y = self.get_xy(name)
if x is None:
return
img[offset:offset+height, x] = y
def _set_search(self, event, x, y, flags, param):
if event != cv2.EVENT_LBUTTONDOWN:
return
t = self.len * 1e6 * x / float(self.width) + self.tmin * 1e6
self._search_callback(t)
def _get_ts(self):
ts = self.f['dvs']['timestamp']
tmin = ts[0]
i = -1
while ts[i] == 0:
i -= 1
tmax = ts[i]
print('tmin/tmax', tmin, tmax)
return int(tmin * 1e-6), int(tmax * 1e-6)
def get_xy(self, name):
d = self.f[name]['data']
print('name', name)
gtz_ids = d[:, 0] > 0
if not gtz_ids.any():
return None, 0
gtz = d[gtz_ids, :]
return (gtz[:, 0] * 1e-6 - self.tmin).astype(int), gtz[:, 1]
def caer_event_from_row(row):
'''
Takes binary dvs data as input,
returns unpacked event data or False if event type does not exist.
'''
sys_ts, head, body = (v.tobytes() for v in row)
if not sys_ts:
# rows with 0 timestamp do not contain any data
return 0, False
d = unpack_header(head)
d['dvs_data'] = body
return int(sys_ts) * 1e-6, unpack_data(d)
if __name__ == '__main__':
parser = argparse.ArgumentParser(formatter_class=RawTextHelpFormatter)
parser.add_argument('filename')
parser.add_argument('--rotate', '-r', type=bool, default=False,
help="Rotate the scene 180 degrees if True, "
"Otherwise False")
parser.add_argument('--display', type=int, default=1,
help="whether to display data on the screen")
args = parser.parse_args()
fname = args.filename
DISPLAY = args.display
# exported file
file_abs_path = os.path.abspath(fname)
# lazy export naming fashion
export_file_path = file_abs_path+".exported.hdf5"
exported_data = h5py.File(export_file_path, "w")
frame_data = exported_data.create_dataset(
name="frame",
shape=(0, 260, 346),
maxshape=(None, 260, 346),
dtype="uint8")
frame_time = exported_data.create_dataset(
name="frame_ts",
shape=(0, 1),
maxshape=(None, 1),
dtype="float32")
event_data = exported_data.create_dataset(
name="event",
shape=(0, 4),
maxshape=(None, 4),
dtype="uint32")
c = Controller(fname,)
m = MergedStream(HDF5Stream(fname, VIEW_DATA))
c._search_callback = m.search
t = time.time()
t_pre = 0
t_offset = 0
r180 = args.rotate
# r180arg = "-r180"
print('recording duration', (m.tmax - m.tmin) * 1e-6, 's')
# direct skip by command line
# parse second argument
try:
second_opt = args.start
n_, type_ = second_opt[:-1], second_opt[-1]
if type_ == '%':
m.search((m.tmax - m.tmin) * 1e-2 * float(n_) + m.tmin)
elif type_ == 's':
m.search(float(n_) * 1e6 + m.tmin)
except:
pass
v = Viewer(tmin=m.tmin * 1e-6, tmax=m.tmax * 1e-6,
zoom=1.41, rotate180=r180, update_callback=c.update)
# run main loop
ts_reset = False
while m.has_data:
try:
sys_ts, d = m.get()
except Queue.Empty:
continue
if not d:
continue
if d['etype'] == 'timestamp_reset':
ts_reset = True
continue
if not d['etype'] in {'frame_event', 'polarity_event'}:
v.show(d)
continue
if d['timestamp'] < t_pre:
print('[WARN] negative dt detected!')
t_pre = d['timestamp']
if ts_reset:
print('resetting timestamp')
t_offset = 0
ts_reset = False
if not t_offset:
t_offset = time.time() - d['timestamp']
print('setting offset', t_offset)
t_sleep = max(d['timestamp'] - time.time() + t_offset, 0)
time.sleep(t_sleep)
v.show(d, sys_ts)
# if time.time() - t > 1:
# print(chr(27) + "[2J")
# t = time.time()
# print('fps:\n', '\n'.join(
# [' %s %s' % (
# k.ljust(20), v_) for k, v_ in v.count.items()]))
# v.count = {k: 0 for k in v.count}
exported_data.close()