.gitignore

# History files
.Rhistory
.Rapp.history
.Rprofile

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron




# Copied the below items from https://github.com/Sage-Bionetworks/GENIE_BPC/blob/main/.gitignore

# ignore other types of data files
*.xlsx
*.xls
*.csv
*.dta
*.sas7bdat
*.sav
*.txt

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# ignore non-code files
*.xlsx
*.csv
*.html
*.docx
*.pptx
*.rdata
*.pdf

# ignore misc files
~$*.docx
~$*.xlsx
~$*.pptx
~$*.rtf
~$*.tmp
Thumbs.db
.DS_Store
*.png

# Packrat
packrat/lib*/
packrat/src/

# renv
renv/library/
renv/python/
renv/staging/

# folders to ignore
data
data-raw
.quarto
scratch_notes