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Rob Campbell edited this page Jun 25, 2020
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THE DOCUMENTATION HAS MOVED Please go to http://bakingtray.mouse.vision
BakingTray is a ScanImage wrapper that performs serial section 2-photon acquisition within MATLAB. The following is an example image obtained with the software. The image is obtained using tile-scanning with a 12 kHz resonant scanner. Tile illumination artifacts have been removed during image assembly by StitchIt.
Installation: Getting Started
Hardware requirements
Setting up: Overview
Verifying hardware operation
Starting BakingTray
Setting up ScanImage
Settings Files
Achieving high stitching accuracy
Installation: Calibration
Basic calibrating procedures
Calibrating the stages
Fine-tuning positioning accuracy
Further User Instructions
FAQ
Problems & Solutions