psom_run_in_singularity.sh

#!/bin/bash

if [ $# != 2 ]
then
    echo "usage: $0 <output_dir> <worker_id>"
    exit 1
fi

OUTPUT_DIR=$1
WORKER_ID=$2

echo singularity exec  $PSOM_SINGULARITY_IMAGE  psom_worker.py -d $OUTPUT_DIR -w $WORKER_ID
singularity exec  $PSOM_SINGULARITY_IMAGE  bash -ilc "psom_worker.py -d $OUTPUT_DIR -w $WORKER_ID"