Bcftools_Dockerfile

FROM ubuntu:18.04 
#fetches docker image ubuntu:18.04
MAINTAINER rosmaninho <pedro.rosmaninho@medicina.ulisboa.pt 
# maintainer name


########################################################
LABEL base.image="ubuntu:18.04"
#software BCFTOOLS https://samtools.github.io/bcftools/bcftools.html
########################################################

#setup ENV variables

ENV BCFTOOLS_HOME        /usr/local/bcftools
ENV GLIBC_VERSION       v2.17
ENV PATH                $BCFTOOLS_HOME/bin:$PATH

ENV TAR_BZ_FILE         bcftools-1.10.2.tar.bz2

#install libraries
RUN apt-get update && \
    apt-get upgrade -y && \
    apt-get install -y git gcc libperl-dev g++ make libgsl0-dev zlib1g-dev bzip2 libbz2-1.0 libbz2-dev libbz2-ocaml libbz2-ocaml-dev liblzma-dev unzip wget libssl-dev libcurl4-openssl-dev autoconf

RUN mkdir -p "$BCFTOOLS_HOME" && \
    cd "$BCFTOOLS_HOME" && \
    wget https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2 && \
    tar -xjvf $TAR_BZ_FILE && \
    mv bcftools-*/* $BCFTOOLS_HOME/. && \
    rm $TAR_BZ_FILE && \   
    autoheader && autoconf && ./configure --enable-libgsl --enable-perl-filters && \
    make && \
    make install && \
    export BCFTOOLS_PLUGINS=/usr/local/bcftools/plugins && \
    DEBIAN_FRONTEND=noninteractive apt-get autoremove -y unzip wget && \
    rm -rf /var/lib/apt/lists/* \