You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
$ datalad containers-run -n bids-bibsnet --input sourcedata --output derivatives/bibsnet-3.3.2/ '{inputs}' '{outputs}' participant -w workdir
[INFO ] Making sure inputs are available (this may take some time)
[INFO ] == Command start (output follows) =====
"uname": executable file not found in $PATH
Traceback (most recent call last):
File "/home/bibsnet//bibsnet", line 48, in <module>
main()
File "/home/bibsnet//bibsnet", line 33, in main
json_args, sub_ses_IDs = get_params([get_stage_name(stg) for stg in STAGES])
File "/home/bibsnet/src/get_args.py", line 177, in get_params
return validate_cli_args(vars(parser.parse_args()), stage_names,
File "/home/bibsnet/src/get_args.py", line 270, in validate_cli_args
) if cli_args["brain_z_size"] else get_brain_z_size(
File "/home/bibsnet/src/get_args.py", line 399, in get_brain_z_size
age2headradius = pd.read_csv(AGE_TO_HEAD_RADIUS_TABLE)
File "/opt/conda/lib/python3.8/site-packages/pandas/util/_decorators.py", line 311, in wrapper
return func(*args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 586, in read_csv
return _read(filepath_or_buffer, kwds)
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 482, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 811, in __init__
self._engine = self._make_engine(self.engine)
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 1040, in _make_engine
return mapping[engine](self.f, **self.options) # type: ignore[call-arg]
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 51, in __init__
self._open_handles(src, kwds)
File "/opt/conda/lib/python3.8/site-packages/pandas/io/parsers/base_parser.py", line 222, in _open_handles
self.handles = get_handle(
File "/opt/conda/lib/python3.8/site-packages/pandas/io/common.py", line 702, in get_handle
handle = open(
PermissionError: [Errno 13] Permission denied: '/home/bibsnet/data/age_to_avg_head_radius_BCP.csv'
[INFO ] == Command exit (modification check follows) =====
run(error): /mnt/DATA/data/dnkennedy/my_experiments/ds000003-qcsing24 (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 3)
run (error: 1)
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: