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PacificBiosciences / HiFi-human-WGS-WDL Public

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Billy Rowell edited this page Aug 9, 2024 · 18 revisions

Welcome to the HiFi-human-WGS-WDL wiki!

Toggle table of contents Pages 16

Home
backend aws healthomics
backend azure
backend gcp
backend hpc
backends
bam_stats
deepvariant
family
gpu
pharmcat
ref_map
singleton
tertiary
tertiary_map
tools_containers

PacBio WGS Variant Pipeline

Workflows

singleton.wdl
family.wdl

Subworkflows

deepvariant.wdl
pharmcat.wdl
tertiary.wdl

Reference Inputs and Dependencies

ref_map file
tertiary_map file
Tools and Containers
GPU support

Backends

HPC
AWS Healthomics
Azure
GCP

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