Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add in MPNST PDX Data #146

Open
sgosline opened this issue Apr 11, 2024 · 4 comments
Open

Add in MPNST PDX Data #146

sgosline opened this issue Apr 11, 2024 · 4 comments
Assignees
Labels
new data Request for additional data to be added

Comments

@sgosline
Copy link
Member

There is PDX data, though no RNASeq, availalbe from Orcestra.ca: https://www.orcestra.ca/xevaset/10.5281/zenodo.4302463

Is it useful to have pdx data that is not sequencing?

@sgosline sgosline added the new data Request for additional data to be added label Apr 11, 2024
@sgosline sgosline moved this to Backlog in CoderData Apr 18, 2024
@sgosline sgosline self-assigned this Apr 18, 2024
@sgosline
Copy link
Member Author

sgosline commented May 3, 2024

Xeva schema is pretty basic, will work toward what PDXNet is doing.

@sgosline sgosline moved this from Backlog to In progress in CoderData May 3, 2024
@sgosline
Copy link
Member Author

sgosline commented May 3, 2024

What tools are avaialble for processing? AFAIK its just XEVA but a more generic (or python-based) tool would be helpful

@sgosline
Copy link
Member Author

sgosline commented May 3, 2024

@sgosline
Copy link
Member Author

sgosline commented Jul 9, 2024

Requires creating a new drug processing script

@sgosline sgosline changed the title consider adding PDX data Add in MPNST PDX Data Jul 9, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
new data Request for additional data to be added
Projects
Status: In progress
Development

No branches or pull requests

1 participant