non-omv-local.yml

name: Testing non OMV scripts (locally using docker)

on:
  push:
    branches: [ master, development, experimental, test*, feature/* ]
  pull_request:
    branches: [ master, development, experimental, test*, feature/* ]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [ 3.9, "3.10" ]

    steps:
    - uses: actions/checkout@v4

    - name: Set up Python  ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version:  ${{ matrix.python-version }}

    - name: Install dependencies
      run: |
          pip install git+https://github.com/OpenSourceBrain/osb-model-validation
          pip install pyNeuroML[annotations]
          pip install python-libsedml
          pip install tellurium
          sudo apt-get install libncurses5 --fix-missing
          omv install jneuroml
          pip install "pymetadata>=0.4.2" docker "requests<2.32.0"

    - name: Final version info
      run: |
        omv list -V # list installed engines
        pip list
        env

    - name: Test local biosimulators compatibility table creation
      run: |
          cd SBML/tests
          sudo rm -rf output
          python ./test_biosimulators_local.py --output-dir=tmp_plots