diff --git a/HH/.test.ex5cvode.eden.omt b/HH/.test.ex5cvode.eden.omt new file mode 100644 index 0000000..eac6222 --- /dev/null +++ b/HH/.test.ex5cvode.eden.omt @@ -0,0 +1,28 @@ +# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation + +target: LEMS_NML2_Ex5_DetCell_cvode.xml +engine: jNeuroML_EDEN +mep: .test.ex5.mep +experiments: + v: + observables: + spike times: + file: + path: ex5_v_cvode.dat + columns: [0,1] + scaling: [1000, 1000] + spike detection: + method: threshold + threshold: 0 + tolerance: 0.00350330618543931 + m: + observables: + spike times: + file: + path: ex5_vars_cvode.dat + columns: [0,1] + scaling: [1000, 1] + spike detection: + method: threshold + threshold: 0.9 + tolerance: 0.0035249957767891716 diff --git a/HH/.test.ex5cvode.jnml.omt b/HH/.test.ex5cvode.jnml.omt new file mode 100644 index 0000000..3938b9f --- /dev/null +++ b/HH/.test.ex5cvode.jnml.omt @@ -0,0 +1,28 @@ +# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation + +target: LEMS_NML2_Ex5_DetCell_cvode.xml +engine: jNeuroML +mep: .test.ex5.mep +experiments: + v: + observables: + spike times: + file: + path: ex5_v_cvode.dat + columns: [0,1] + scaling: [1000, 1000] + spike detection: + method: threshold + threshold: 0 + tolerance: 0.005542225676726113 + m: + observables: + spike times: + file: + path: ex5_vars_cvode.dat + columns: [0,1] + scaling: [1000, 1] + spike detection: + method: threshold + threshold: 0.9 + tolerance: 0.005574638211610937 diff --git a/HH/.test.ex5cvode.jnmlnrn.omt b/HH/.test.ex5cvode.jnmlnrn.omt new file mode 100644 index 0000000..1fcec0d --- /dev/null +++ b/HH/.test.ex5cvode.jnmlnrn.omt @@ -0,0 +1,28 @@ +# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation + +target: LEMS_NML2_Ex5_DetCell_cvode.xml +engine: jNeuroML_NEURON +mep: .test.ex5.mep +experiments: + v: + observables: + spike times: + file: + path: ex5_v_cvode.dat + columns: [0,1] + scaling: [1000, 1000] + spike detection: + method: threshold + threshold: 0 + tolerance: 0.010825060439277775 + m: + observables: + spike times: + file: + path: ex5_vars_cvode.dat + columns: [0,1] + scaling: [1000, 1] + spike detection: + method: threshold + threshold: 0.9 + tolerance: 0.010867948469414872 diff --git a/HH/LEMS_NML2_Ex5_DetCell.xml b/HH/LEMS_NML2_Ex5_DetCell.xml index 8d3535b..c1e9d3e 100644 --- a/HH/LEMS_NML2_Ex5_DetCell.xml +++ b/HH/LEMS_NML2_Ex5_DetCell.xml @@ -21,21 +21,21 @@ - + - + - + - + diff --git a/HH/LEMS_NML2_Ex5_DetCell_cvode.xml b/HH/LEMS_NML2_Ex5_DetCell_cvode.xml new file mode 100644 index 0000000..15f3312 --- /dev/null +++ b/HH/LEMS_NML2_Ex5_DetCell_cvode.xml @@ -0,0 +1,66 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +