diff --git a/openfecli/commands/input.yaml b/openfecli/commands/input.yaml
deleted file mode 100644
index 50ec206cd..000000000
--- a/openfecli/commands/input.yaml
+++ /dev/null
@@ -1,43 +0,0 @@
-# things behind a "method" key have to match up to a known thing in openfe
-
-network:
-  method: plan_radial_network
-  scorer: default_lomap_score
-
-# Question:
-# use settings here, to match Protocol
-
-mappers:
-  - method: LomapAtomMapper
-    settings:
-      timeout: 60
-  - method: LomapAtomMapper
-    settings:
-      timeout: 120
-
-# OR not nesting settings, anything without the "method" key gets put into kwargs
-
-mappers:
-  - method: LomapAtomMapper
-    timeout: 60
-  - method: LomapAtomMapper
-    timeout: 120
-
-
-# Question:
-# is mapper*s* always a list and mapper always a single item
-# or do we allow mapper to define either a list or single item behind it?
-
-mapper:
-  method: LomapAtomMapper
-  settings:
-    timeout: 120
-
-
-protocol:
-  method: OpenMM_RFE
-  settings:
-    alchemical_sampler_settings:
-      n_repeats: 5
-    simulation_settings:
-      production_length: 11 ns