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Changelog
Philip Wenig edited this page Apr 5, 2024
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146 revisions
- Refactor m/z and abundance limits OpenChrom#490
- Import CDF with RetentionUnit="s" specified OpenChrom#489
- Move RetentionIndexMarker to the SWT bundle ChemClipse#1723
- Delete targets fails if a scan/peak contains NIST-DB entries ChemClipse#1722
- NodeProcessorPreferences - make preferences available ChemClipse#1721
- Fixed progress reporting when running process methods ChemClipse#1720
- Process Settings - reset button handle changes ChemClipse#1719
- ProcessSetting - refactor preference page ChemClipse#1718
- Target Label - allow to adjust X and Y value ChemClipse#1717
- Process Method Recorder ChemClipse#1716
- Process Method - select profile interactively ChemClipse#1715
- Deprecate ion limit and abundance exceptions ChemClipse#1713
- IIdentificationTarget - don't translate the identifier OpenChrom#488
- Chart Export - set file name OpenChrom#487
- Adjust return type of service OpenChrom#486
- EJML to 0.43.0 OpenChrom#485
- Add the N2000 Chromatography Data System converter OpenChrom#482
- Resolve the dependencies manually (again) ChemClipse#1714
- Update Eclipse CBI to version 1.4.3 ChemClipse#1713
- Add the CBI repository ChemClipse#1711
- Update Tycho to version 4.0.6 ChemClipse#1710
- Enable code signing ChemClipse#1709
- IIdentificationTarget - don't translate the identifier ChemClipse#1707
- RDML multi channel support and export ChemClipse#1706
- Simplify the workaround for Tree.setImage crashes on Linux ChemClipse#1705
- Molecule Part - add copy to clipboard support ChemClipse#1704
- Chart Export - set file name ChemClipse#1703
- Fixed some inconsistencies in XML file format internal naming ChemClipse#1702
- Retention Index Importer ChemClipse#1701
- Add a simple CSV import converter for FT-IR ChemClipse#1700
- Cleanup feature licenses and copyright ChemClipse#1699
- Remove old version EJML ChemClipse#1698
- Scrollable Chart - set file name SWTChart#389
- Add an installer frontend for proprietary file format converters OpenChrom#481
- Migrate the AMDIS Peak Detector here OpenChrom#466
- Scan Chart UI - add update listener ChemClipse#1697
- Enable Peak Quantifier for WSD ChemClipse#1696
- Rename XIR to VSD everywhere ChemClipse#1695
- Add Eclipse platform as dependency ChemClipse#1694
- Fix NLS unused/missing message ChemClipse#1693
- Update to Eclipse RCP 2024-03 ChemClipse#1692
- Implement chromatogram batch job save as ChemClipse#1691
- Add UV/Vis JCAMP-DX support ChemClipse#1690
- Improved JCAMP-DX Infrared Spectroscopy compatibility ChemClipse#1689
- org.eclipse.chemclipse.chromatogram.msd.classifier → org.eclipse.chemclipse.chromatogram.xxd.classifier ChemClipse#1688
- Remove AMDIS peak detector ChemClipse#1687
- Organise techniques in the README file ChemClipse#1686
- Remove OpenChrom trademark ChemClipse#1685
- Implement NIST's SpectroML ChemClipse#1684
- Rename HPLC DAD Scan Signal API to Absorbance OpenChrom#465
- Rename ISD, XIR to VSD (vibrational spectroscopy) OpenChrom#464
- Clean up the data model around vibrational spectroscopy OpenChrom#463
- Chromatogram Filter: Header Transfer ChemClipse#1683
- Add initial support for UV/Vis spectroscopy data ChemClipse#1682
- Rename XIR to VSD in more occasions ChemClipse#1681
- Rename HPLC DAD Scan Signal API to Absorbance ChemClipse#1680
- Fixed #1678 - Rename ISD, XIR to VSD (vibrational spectroscopy) ChemClipse#1679
- Rename ISD, XIR to VSD (vibrational spectroscopy) ChemClipse#1678
- PCA - use default background in formula view ChemClipse#1677
- Remove German words in English translation ChemClipse#1676
- Clean up the data model around vibrational spectroscopy ChemClipse#1675
- Add formula, SMILES, InChI(Key) to CSV peak report OpenChrom#462
- Cleanup unnecessary references OpenChrom#461
- Chromatogram Filter - reshape chromatogram section references ChemClipse#1674
- Chromatogram Filter - split chromatogram into HighRes references ChemClipse#1673
- Add read/write support for Chemical Markup Language mass spectra ChemClipse#1672
- Chromatogram Filter - split chromatogram into MS/MS references ChemClipse#1671
- Chromatogram Info Part - show contained IonTransitions ChemClipse#1670
- Open Chromatography Binary - export references in separate files ChemClipse#1669
- Add read support for Chemical Markup Language IR spectra. ChemClipse#1668
- Header Data - add findings support ChemClipse#1666
- Clipboard Table Content - Value Delimiter ChemClipse#1665
- Wavenumber Subtractor - table option for subtract values ChemClipse#1664
- MethodProcessSupport - validate DataType correctly ChemClipse#1663
- IChromatogram - option to store temporary reference data ChemClipse#1662
- Part Stack Position - defaults ChemClipse#1661
- Peak Detector / Review UI - replace gray/inactive background by default OpenChrom#460
- Generate more compliant AnIML MS chromatography documents OpenChrom#459
- Read the AnIML audit trail OpenChrom#458
- Fixed problems exporting the wavelength in HPLC-DAD AnIML files OpenChrom#457
- Update to OPSIN 3.8 OpenChrom#456
- Use our own ATDD mirror server OpenChrom#455
- Fix a crash when writing HPLC-DAD referenced chromatograms ChemClipse#1660
- BackgroundMode - replace INHERIT_FORCE by DEFAULT ChemClipse#1659
- Export JDX Readers ChemClipse#1658
- Chromatogram Export CSV - export references ChemClipse#1657
- Saving referenced HPLC-DAD .ocb chromatogram fails ChemClipse#1656
- Molecule View - remember the user selection ChemClipse#1655
- TreeViewer Linux - option to display icons ChemClipse#1654
- Improve AnIML HPLC-DAD standard conformity OpenChrom#454
- Workaround a native crash in Data Explorer icon setting on Linux ChemClipse#1653
- NotDefinedException Scan Filter ChemClipse#1651
- Persist the process method UUID properly ChemClipse#1650
- Add new Chromatogram and Peak sub menus to the main menu ChemClipse#1649
- Reorder the file menu ChemClipse#1647
- Remove external programs menu ChemClipse#1646
- Refactor Target Label Marker (Constructor) ChemClipse#1645
- Fixed MissingResourceException in org.eclipse.chemclipse.processing ChemClipse#1644
- MissingResourceException: Can't find bundle for base name org.eclipse.chemclipse.processing.l10n.messages ChemClipse#1643
- Better error messages for processing ChemClipse#1642
- Use MethodConverter shortcuts ChemClipse#1641
- Adjust Chromatogram Filter ID ChemClipse#1640
- Move some chromatogram filters into range selection sub menu ChemClipse#1639
- Adjust SVG export OpenChrom#453
- Prefer a Docker solution to unverified Actions. OpenChrom#451
- CDF Import converter - fix ArrayIndexOutOfBoundsException OpenChrom#450
- ChromatogramChart - refactor range support ChemClipse#1638
- Translate menu entries from system supplied process methods ChemClipse#1637
- Fix spelling of mass spectrum in menus ChemClipse#1636
- Remove Peak "Background" visualization ChemClipse#1635
- Target Support - convenient method to get best IIdentificationTarget ChemClipse#1634
- Chromatogram Editor - display peaks without black background ChemClipse#1633
- Added polarity and progress bar to mzXML import ChemClipse#1632
- Add stack icon ChemClipse#1631
- Add Rich Text Format to HTML converter ChemClipse#1630
- Fixed PCA perspective task tiles not appearing ChemClipse#1629
- The PCA perspective lost its welcome screen ChemClipse#1628
- Cleanup Inject API usage ChemClipse#1627
- Fix Data Explorer items not always rendering correctly ChemClipse#1625
- Try to workaround a native crash in Data Explorer icon setting on Linux ChemClipse#1624
- Update to Eclipse 2023-12 ChemClipse#1623
- Update Tycho to version 4.0.5 ChemClipse#1621
- Update Eclipse to 2023-09 ChemClipse#1620
- Update Eclipse to 2023-06 ChemClipse#1619
- Editor - Retrieve Chromatogram Selections ChemClipse#1618
- Refactor comments/code SWTChart#388
- Line Series - Area Strict Option SWTChart#387
- Replace deprecated createImage by createImageWithDefault method SWTChart#386
- The Inject annotation has been replaced by the Jakarta version. SWTChart#385
- Fix resource leak issue SWTChart#383
- Don't print unnecessary exception SWTChart#381
- org.eclipse.swtchart.extensions bundle activation prints unnecessary exception to syserr SWTChart#380
- Remove PDFJet Export Converter OpenChrom#448
- Template Report - add option to format concentrations OpenChrom#447
- Try to fix a native crash in SWT TreeViewer icon setting on Linux ChemClipse#1617
- Add a multi-page PDF chromatogram report ChemClipse#1616
- Retention index export - sort the entries by Retention Time ChemClipse#1615
- Fix wrong folder ChemClipse#1614
- Chromatogram Retention Indices - Export Option ChemClipse#1613
- TimeRangeDialog / Enable Resizable Option ChemClipse#1612
- Translate SVG export menu in German SWTChart#378
- PreferenceInitializer - default initialization part III OpenChrom#447
- PreferenceInitializer - default initialization part II OpenChrom#446
- PreferenceInitializer - replace by default initialization OpenChrom#445
- CDK - molecular mol weight/exact mass support OpenChrom#444
- Harmonize the column type description ChemClipse#1611
- RetentionIndexMap - add isEmpty and start/stop RI method ChemClipse#1610
- Chromatogram Overlay - keep time selection when changing settings ChemClipse#1609
- Retention Index Recalculator ChemClipse#1608
- Add instrument to the measurement info API ChemClipse#1607
- PreferenceInitializer - default initialization part III ChemClipse#1606
- Targets Drag'n'Drop Windows - add option ChemClipse#1605
- PreferenceInitializer - default initialization part II ChemClipse#1604
- Preference Supplier Support - rename ChemClipse#1603
- PreferenceInitializer - replace by default initialization ChemClipse#1602
- MassSpectrum Library Editor - layout control ChemClipse#1601
- Chromatogram MSD - store combined mass spectrum ChemClipse#1600
- Target Support - fix NPE ChemClipse#1599
- IPreferenceSupplier - add default method for initialization ChemClipse#1598
- Process Supplier - enable adding literature references ChemClipse#1597
- Data Explorer - select process method ChemClipse#1596
- Data Explorer - select method directory ChemClipse#1595
- Chromatogram Editor - update references / alignment toolbar ChemClipse#1594
- Chromatogram Splitter (SCAN, SIM) ChemClipse#1593
- Add a JMol based image renderer OpenChrom#443
- Preserve "User Location" ChemClipse#1592
- Fix error "Please select a quantitation table." always appearing when entering the second external standard ChemClipse#1591
- Enable expanding to last directory again ChemClipse#1584
- Fixed a crash when deleting targets. ChemClipse#1582
- Fixed a crash upon first start when switching to Data Explorer. ChemClipse#1575
- Added undo/redo to targets, removing a popup warning. ChemClipse#1585
- Added a section for time ranges in the import dialog. ChemClipse#1576
- Sorted the perspective dialog alphabetically. ChemClipse#1583
- Fixed a crash when MOLstructs are empty. OpenChrom#438
- Add a code signing profile OpenChrom#436
- Add WavelengthTableEditor ChemClipse#1574
- Additional constructor for Marked WaveWavelengths ChemClipse#1573
- Feature WSD Spectrum based on marked wavelengths ChemClipse#1572
- Add more fields from MassBank ChemClipse#1571
- Method Editor - enable multipe selection ChemClipse#1569
- Propose new API for instrument type and ionization mode ChemClipse#1568
- Changed polarity from String to Enum ChemClipse#1567
- Unknown Target - add retention index marker option ChemClipse#1566
- Peak/Scan List - show all peak profiles (CTRL + A) ChemClipse#1565
- Data Explorer - prevent that files are loaded twice ChemClipse#1564
- TSD - add converter service adapter for ISD ChemClipse#1563
- Add an ISD data type rasterizer ChemClipse#1562
- Move RasterizeCalculator to the core bundle ChemClipse#1561
- Update Tycho to version 4.0.4 ChemClipse#1560
- Add sample name field to UI ChemClipse#1559
- Custom method to get/set status of "Buffered Selection" SWTChart#377
- Improve MS/MS support OpenChrom#434
- Standardize sample name in measurement API ChemClipse#1558
- Remove redundant crossing point per well API ChemClipse#1557
- Add read support for MS/MS fields from MassBank .msp files ChemClipse#1556
- Display the PCR noiseband ChemClipse#1555
- RegularLibraryMassSpectrum - add properties map and MS/MS support ChemClipse#1554
- Improve PCR channel and subset selection ChemClipse#1553
- Localize PCR perspective ChemClipse#1552
- TSD - add converter service adapter for MSD/WSD ChemClipse#1551
- Use system fonts everywhere ChemClipse#1550
- Some minor updates to the Explorer UI ChemClipse#1549
- Add write support for RDES ChemClipse#1548
- Format externalized strings consistently SWTChart#376
- Axis tick labels are not properly shown in some cases SWTChart#375
- Polished the title and the example background colors SWTChart#374
- Localize the chart legend SWTChart#373
- Fixed Template Peak Detector UI using a greyish background color OpenChrom#433
- Services - handle NPEs OpenChrom#432
- Switch default font name to Verdana ChemClipse#1546
- Chromatogram Filter - clip scans by scan number ChemClipse#1545
- Switch default font name to Verdana SWTChart#371
- Converter bundle rename chemclipse -> ocx OpenChrom#431
- Hook up reset defaults for list settings OpenChrom#430
- Add support to restore default processor settings OpenChrom#429
- Refactor IUpdateListener/IUpdateListenerUI support OpenChrom#428
- Comparison Result - refactor matches/ratings OpenChrom#427
- Compensation Quantifier - consider group field OpenChrom#426
- Use the silent builder in more places OpenChrom#425
- Update Maven to 3.9 OpenChrom#423
- BaselineModel - add copyFrom method ChemClipse#1544
- ChromatogramEditor3x - fails to load CSD and WSD ChemClipse#1543
- Added read support for older RDML versions ChemClipse#1542
- Fixed a native crash in SWT TreeViewer labelling on Linux ChemClipse#1541
- Fixed color compensation being enabled by default when there is none ChemClipse#1540
- Rename supplier.chemclipse to supplier.ocx ChemClipse#1539
- Update Apache Commons ChemClipse#1538
- Added basic read support for RDML ChemClipse#1537
- Fixed a memory leak in Database Editor ChemClipse#1536
- TimeRange Label cycling option ChemClipse#1534
- Interactive scan/peak target delete and identification shortcuts ChemClipse#1533
- Refactor IUpdateListener/IUpdateListenerUI support ChemClipse#1532
- Added a button to restore default processor settings ChemClipse#1531
- Comparison Result - refactor matches/ratings ChemClipse#1530
- Chromatogram Model - add finalized status ChemClipse#1529
- Icon - add 64x64 add/open image ChemClipse#1528
- Preference Supplier - add postfix option ChemClipse#1527
- Consider group in quantitation entry ChemClipse#1526
- Fixed optional setting fields requiring a value set ChemClipse#1525
- Added progress bars to the File Identifier ChemClipse#1524
- Annotate required setting fields ChemClipse#1523
- Added support for settings with 8 or 16 bit data types ChemClipse#1522
- Quantitation Entry - add group field ChemClipse#1521
- Restore defaults for settings ChemClipse#1520
- Time Range - support to shift retention times via the editor ChemClipse#1519
- Icon - editor top/bottom ChemClipse#1518
- Add clickbinding help screens ChemClipse#1516
- Export/Import *.msl - enable to use additional fields ChemClipse#1515
- Retention Index File - format retention time ChemClipse#1513
- PCA - add value option for peak data ChemClipse#1512
- Add the UTF8 two button mouse symbol SWTChart#369
- Added a help dialog for mouse and keyboard combinations SWTChart#368
- Remove NMR related data type FID OpenChrom#421
- Adjust Batch Job NMR OpenChrom#420
- Add Chromatogram Alignment Service Facilities OpenChrom#419
- Added MassBank Japan as an option OpenChrom#418
- CDK updates OpenChrom#417
- Graphics2D - support rectangle and line OpenChrom#416
- OSGi Support for Identification OpenChrom#415
- Remove Splash dependency OpenChrom#414
- Improve Graphics2D export options OpenChrom#413
- Remove NMR related data type FID ChemClipse#1511
- Batch Process - saving data types fails, support ISD ChemClipse#1510
- Export filter.supplier.scan.core package ChemClipse#1509
- Revamp PCR tabular reporting settings ChemClipse#1508
- Update Jakarta XML Binding ChemClipse#1507
- ExtendedTargetsUI - add edit update listener ChemClipse#1506
- Check date format of header data ChemClipse#1505
- Custom Series - modify target label marker ChemClipse#1504
- Add drag & drop image ChemClipse#1503
- Peak Internal Standard / Concentrations ChemClipse#1502
- Apply chart settings after modifying ChemClipse#1501
- Fixed a null reference exception in the welcome screen tile definition ChemClipse#1500
- Chromatogram Editor - move toggle legend button ChemClipse#1499
- Added our own implementation of SPLASH spectra hash ChemClipse#1498
- Add convenient method to open a browser URL ChemClipse#1497
- Method Editor - sort supported data types ChemClipse#1496
- Custom Series - add support for rectangle and line SWTChart#367
- Support Custom Series (Experimental) SWTChart#365
- Plot Area - enable to draw centered image and text SWTChart#364
- Open Chromatography Method - file dialog shortcuts ChemClipse#1495
- Process Method Dialog - enable ISD checkbox ChemClipse#1494
- Fixed empty columns in PCR export breaking Excel auto-sort ChemClipse#1493
- Chromatogram ISD - add subtract filter ChemClipse#1492
- Update wavenumber overlay shortcut ChemClipse#1491
- Chromatogram ISD - add a wavenumber calibration filter ChemClipse#1490
- VectorGraphics - test export options OpenChrom#412
- Question about peak identifier OpenChrom#411
- Refactor Classifier OpenChrom#410
- Harmonize open file in system editor OpenChrom#409
- Use AutoClosable for FileOutputStream OpenChrom#408
- Harmonize FileDialog usage OpenChrom#407
- Harmonize menu categories OpenChrom#406
- OSGi Support for Deconvolution OpenChrom#405
- Chromatogram Peak Report (*.csv) - print all columns option OpenChrom#404
- Opening projects and batch jobs (on different computers) OpenChrom#403
- GC-FID data: automatinc peak detector / integrator not working OpenChrom#402
- Fixed Wikidata query from name failing ChemClipse#1489
- Fixed method input widget being inconsistently styled ChemClipse#1488
- Chromatogram Overlay - add support for ISD chromatograms ChemClipse#1487
- NIST Scan Export Converter (*.msl and *.msp) ChemClipse#1486
- NLS missing message ChemClipse#1485
- Update MethodSupportUI when changing/saving methods ChemClipse#1484
- Editor Toolbar Processor - keep sort order ChemClipse#1483
- Icons - add vector image icon ChemClipse#1482
- Regular Expression (Tester) ChemClipse#1481
- Interactive File Export Processor - use syncExec ChemClipse#1480
- Open Chromatography Binary (*.ocb) - dynamic export processor ChemClipse#1479
- Calibration File Export - prefer chromatogram name ChemClipse#1478
- Refactor Classifier - they shall be not restricted on MSD data only ChemClipse#1477
- Calibration Processor - open in system editor option ChemClipse#1476
- Harmonize open file in system editor ChemClipse#1475
- Literature Support - parse alternate DOI links ChemClipse#1474
- Harmonize FileDialog usage ChemClipse#1473
- Harmonize menu categories ChemClipse#1472
- Add an interactive Calibration (*.cal) file export option ChemClipse#1471
- PCR Settings - refactor to use INSTANCE directly ChemClipse#1470
- Retention Index Calculator - add time shift option ChemClipse#1469
- High/Low Pass Peak Filter - add Area/Height option ChemClipse#1468
- Clipboard needs to be disposed ChemClipse#1467
- Service to retrieve ILibraryInformation entries via synonym, ... ChemClipse#1466
- Fixed Open With in Data Explorer ChemClipse#1465
- Series Mapper - catch problems when import settings SWTChart#363
- Clipboard needs to be disposed SWTChart#362
- SVG Export - refactor the template method SWTChart#361
- Clipboard Copy Action - support specific handlers e.g. 'image/svg+xml' SWTChart#360
- Refactor SVG LineSeries Export SWTChart#359
- IIdentificationTarget - unify getting target/library information OpenChrom#401
- Removed MSqBAT library OpenChrom#400
- IIdentificationTarget - unify getting target/library information ChemClipse#1464
- Open Chromatography Binary - add monitor message ChemClipse#1463
- Processor - Retention Index Curator ChemClipse#1461
- IExtendedPartUI - SWT.PUSH and SWT.TOGGLE option ChemClipse#1460
- Improve FT-IR and Raman models OpenChrom#399
- Internal Standards - adjust response factor field OpenChrom#397
- Added links to MassBank OpenChrom#396
- Use a shared license for the license agreement OpenChrom#395
- QuantRatio Measurement Results - display the name OpenChrom#394
- Quant Ratio Export - adjust file extension OpenChrom#393
- Quant Ratio Classifier - add column "Response Factor" OpenChrom#392
- Added support for the MicrobeNet MALDI XML format OpenChrom#391
- Improve FT-IR and Raman models ChemClipse#1459
- Get ILibraryInformation from Peak ChemClipse#1458
- Main Toolbar Tooltips ChemClipse#1457
- Internal Standards - adjust response factor field ChemClipse#1456
- Chromatogram Editor - decorate GridLine button ChemClipse#1455
- Retention Index Export Derive Option ChemClipse#1453
- Retention Index Assigner ChemClipse#1451
- Calibration *.cal Export - curate names ChemClipse#1450
- Added a web link button to Scan Chart and Scan Table ChemClipse#1449
- Chromatogram Editor - replace JFace Actions/Toolbar ChemClipse#1447
- Retention Index - Extrapolation ChemClipse#1446
- Use a shared license for the license agreement ChemClipse#1445
- Update to Java 17 SWTChart#358
- Updated Tycho to 3.0.5 OpenChrom#390
- Avoid SpecificationValidator for *.ab1 files OpenChrom#389
- Drop support for SPECLUST .zip files OpenChrom#388
- Added an integration test for reading/writing *.animl MSD chromatograms OpenChrom#387
- Added integration tests for the FT-IR *.gaml converter OpenChrom#386
- Improved File Explorer performance of *.mgf files OpenChrom#385
- Enable FileContentMatcher for additional data types OpenChrom#384
- Improved *.gaml file explorer performance and added unit tests OpenChrom#383
- Improved .cdf file explorer performance OpenChrom#382
- Improved .animl file explorer performance OpenChrom#381
- Added support for CAS Common Chemistry OpenChrom#380
- Add a link to The Good Scents Company Information System OpenChrom#379
- Updated Tycho to 3.0.5 ChemClipse#1443
- Improved *.msd and *.dx Data Explorer performance ChemClipse#1442
- Improved Data Explorer performance for *.cal *.xy and *.mpl ChemClipse#1441
- Improved CSV Peak Importer Data Explorer performance ChemClipse#1440
- Drop support for .zip mass spectra databases ChemClipse#1439
- Enable processors for ISD chromatograms ChemClipse#1438
- Enable FileContentMatcher for additional data types ChemClipse#1437
- Integration Area Part - show details ChemClipse#1436
- Added a Wikidata target identifier ChemClipse#1435
- Time Range Selection via arrow keys fails initially ChemClipse#1434
- Fixed missing file content matcher default implementation for PCR, NMR, Sequences and Quantitation DBs ChemClipse#1433
- Added support for mulitple Target Identifiers ChemClipse#1432
- Improved File Explorer performance by doing deep content checks only on click ChemClipse#1431
- Reduced memory footprint of HPLC-DAD chromatograms OpenChrom#378
- Settings Editor - make editor fit into space of preference page OpenChrom#377
- Assigner / Referencer Editor - fill table OpenChrom#376
- Standards Assigner - make validator reusable OpenChrom#375
- Peak Detector Template - enable to select the peak type OpenChrom#374
- org.eclipse.ui.console should be not used in the model bundle ChemClipse#1430
- Reduced memory footprint of HPLC-DAD chromatograms ChemClipse#1429
- Settings Editor - make editor fit into space of preference page ChemClipse#1428
- Retention Index / Time Ranges editors ChemClipse#1427
- Process Method - unify method name handling ChemClipse#1426
- PeakType Labels - fix closing brackets ChemClipse#1425
- Handle error when parsing user settings ChemClipse#1424
- Method support - refactor the method dialog options ChemClipse#1423
- SWT - Text/StyledText with disabled copy & paste option ChemClipse#1422
- Added some generic types and code cleanups ChemClipse#1421
- Fixed .mzMLb converter OpenChrom#373
- Chromatogram Template Report - specific extension *.tsv OpenChrom#372
- Removed generics from export converters OpenChrom#371
- mzML output validation errors OpenChrom#370
- Move tests into test subdirectory OpenChrom#369
- Chromatogram Filter - adjust generics OpenChrom#367
- Added basic drag & drop functionality to Data Analysis ChemClipse#1420
- Added mzML file format and software vocabularies ChemClipse#1419
- Added more decimal places to exact masses from mzXML ChemClipse#1418
- TimeRangesChart - add an option to skip the range/point selection ChemClipse#1417
- Increased mzML standards compliance and openMS compatibility ChemClipse#1416
- TimeRangesChart - handle accidental clicks ChemClipse#1415
- Removed generics from export converters ChemClipse#1414
- Reduced suppressed warning rawtypes ChemClipse#1408
- Removed generic typing in *ChromatogramFilter ChemClipse#1407
- Chromatogram Peak Labels - add combine option for selections ChemClipse#1406
- Added abundance ranges to Chromatogram Filter → Chromatogram Selection (Select Range) ChemClipse#1405
- Area Selection - set specific cursor SWTChart#356
- Delete series - speed up deleting all series SWTChart#355
- Scrollbar - enable moving forward/backward by mouse double click SWTChart#354
- Code cleanup in PDF Reporting OpenChrom#366
- Added peak resolution to CSV report OpenChrom#365
- Replaced deprecated EJML fields OpenChrom#364
- Adjust import/export file extensions for ISTD assigner/referencer OpenChrom#363
- Template Report - add options Area % and Concentrations OpenChrom#362
- Chromatogram CDF Reader - fix NPE OpenChrom#361
- Deprecate the command line processor extension point OpenChrom#360
- Fixed append image report not combining images ChemClipse#1404
- Added a chromatogram image export ChemClipse#1403
- Add convenient support for the JFace PreferenceStore ChemClipse#1402
- Open Chromatogram Binary - validation save peaks ChemClipse#1401
- Transform Chromatogram to MSD or CSD ChemClipse#1400
- Added Peak Resolution calculation ChemClipse#1399
- Retention Index Marker Editor - update table ChemClipse#1398
- Update to EJML 0.43 ChemClipse#1397
- Add "Tangent Skim" peak type option ChemClipse#1396
- Chromatogram Target Labels - add "Area [%]" option ChemClipse#1395
- Preference Supplier - use default methods ChemClipse#1394
- Reduce the complexity of the application ChemClipse#1393
- PCA - fix part styling ChemClipse#1392
- Group Handler Peaks - add synonyms, columns ... parts ChemClipse#1391
- Update LibraryInformationPart ChemClipse#1390
- Refactor Peak Classifier Support & Processing Handling ChemClipse#1389
- Fixed ScrollableChart crashing on initializing SWTChart#352
- NullPointerException when setting background color on uninitialized charts SWTChart#351
- Fixed wizard chart backgrounds not being white OpenChrom#359
- Fixed UI Detector/Review wizards in dark mode OpenChrom#358
- Template Report Extension - specific extension OpenChrom#357
- Unify Linux Combo/ComboViewer workaround OpenChrom#356
- Removed ChemClipse source dependency OpenChrom#355
- Fixed the RI Calibration wizard chart backgrounds ChemClipse#1388
- Fixed Calibration Index Creation Wizard in Dark Mode ChemClipse#1387
- Paint backgrounds white again ChemClipse#1386
- Fixed wrong scan edit label background color on focus change ChemClipse#1385
- Style charts and tables instead of tabs ChemClipse#1384
- Chromatogram Header - improved edit support ChemClipse#1383
- Chromatogram Overlay - fix styling part ChemClipse#1382
- Chromatogram Overlay - add option to display data type ChemClipse#1381
- Chromatogram Editor - add option to open editor only once ChemClipse#1380
- Chromatogram Editor - display header field as tooltip ChemClipse#1379
- Chromatogram Converter - check if extension is set ChemClipse#1378
- Chromatogram Model - add link to master when adding a reference ChemClipse#1377
- Data Import - separation column mapping ChemClipse#1376
- Draw line for y selection ChemClipse#1375
- Use StAX to check for mzML chromatograms vs. spectra ChemClipse#1374
- Divisor Chromatogram Filter is broken ChemClipse#1373
- Unify Linux Combo/ComboViewer workaround ChemClipse#1372
- Peak List - display number of selected peaks/scans ChemClipse#1370
- Fixed Y-axis backgrounds SWTChart#350
- Fixed axis background using outdated chart backgrounds SWTChart#349
- Added CSS support SWTChart#348
- Unify Linux Combo/ComboViewer workaround SWTChart#347
- Dispose the isotope heatmap OpenChrom#354
- Fixed the Console view not displaying anything ChemClipse#1369
- Fixed tabs becoming greyish on double tap ChemClipse#1368
- Improved Windows dark mode further ChemClipse#1367
- Fixed theme problems on Windows ChemClipse#1366
- Added per theme CSS styling ChemClipse#1365
- Dispose the heatmap widget ChemClipse#1364
- IntensityGraphFigure is not properly disposed ChemClipse#1363
- Update to Tycho 3.0.4 ChemClipse#1362
- Update SLF4J and add Logback to diagnose thirdparty library problems ChemClipse#1361
- Removed dependency on SLF4J ChemClipse#1360
- Added UI responsive monitoring ChemClipse#1359
- Tables - enable column order and width tracking by default OpenChrom#353
- Fixed CSV Peak Report exporting the master chromatogram twice when reporting references OpenChrom#352
- Preference Page - Validations Import/Export Path OpenChrom#351
- Position Adjuster - addChangeListener support OpenChrom#350
- Fix labels - plural form OpenChrom#349
- Fixed toolbar text resetting when unrelated settings are changed ChemClipse#1358
- Tables - enable column order and width tracking by default ChemClipse#1357
- Table - dynamic copy to clipboard settings ChemClipse#1356
- CAS Validation ChemClipse#1355
- Template Peak Detector Options ChemClipse#1353
- Added back white background to charts ChemClipse#1352
- Preference Page - Validations Import/Export Path ChemClipse#1351
- Preference Page - Validations Import/Export Path ChemClipse#1350
- WNC - fix preference handling ChemClipse#1349
- Set specific chart types - required by SVG export ChemClipse#1348
- Scan Table - apply search on update ChemClipse#1347
- Literature Part - enable multiple references ChemClipse#1346
- Fix labels - plural form ChemClipse#1345
- Gap Filler - extend for ISD data type ChemClipse#1344
- Chromatogram Filter - add a scan merger filter ChemClipse#1343
- ChromatogramISD - enable Savitzgy-Golay Filter ChemClipse#1342
- ScanISD - enable adjust Total Signal ChemClipse#1341
- Fixed Apache POI dependencies ChemClipse#1340
- Updated to Eclipse RCP 2023-03 and Nebula 3.0.0 ChemClipse#1339
- Translate MSD Classifiers ChemClipse#1338
- Set specific chart types - required by SVG export SWTChart#346
- Fix labels - plural form SWTChart#345
- Update to Eclipse 2023-03 SWTChart#344
- Removed hard-coded background color as it seems to vary between systems SWTChart#343
- SVG export label is broken SWTChart#342
- Removed hard-coded backgrounds SWTChart#341
- Time Ranges Chart - add a point selection position marker ChemClipse#1337
- Fixed a null chromatogram crashing the whole batch process ChemClipse#1336
- Code cleanup ChemClipse#1335
- Downgrade Apache Commons CSV to 1.8 again ChemClipse#1334
- Avoid Orbit to speed up target platform resolution ChemClipse#1333
- Retention Index Calculator - store index entries in chromatogram ChemClipse#1332
- Update Tycho and downgrade Maven ChemClipse#1331
- Enable unit tests that used unavailable file format converters ChemClipse#1330
- Fixed molecule view not preferring offline services ChemClipse#1329
- Added icons for library metadata parts ChemClipse#1328
- IPreferenceSupplier - get/put OpenChrom#348
- Mol Weight Calculator - also calculate the formula OpenChrom#347
- Support for Raman scattering signals ChemClipse#1325
- Time Ranges Chart - enable previous/next time range via keys ChemClipse#1324
- Literature Part - add search bar and DOI link ChemClipse#1323
- Processor System Settings (Targets Part) ChemClipse#1322
- Time Ranges Chart - add point selection option ChemClipse#1321
- Retention Index Settings Support ChemClipse#1320
- Open Chromatography Binary - System Settings ChemClipse#1319
- IPreferenceSupplier - add default methods to get/put values ChemClipse#1318
- Identification Target - enable Drag & Drop support ChemClipse#1317
- Peak Filter - delete peaks by trace ChemClipse#1316
- Intensity Cut Off Filter for chromatograms ChemClipse#1314
- Chromatogram Export *.ocb - improve peak validation ChemClipse#1313
- Enabled default Eclipse themes ChemClipse#1312
- IChromatogram TSD/ISD - set file via import converter ChemClipse#1311
- Localized Chromatogram Filters ChemClipse#1310
- Support for LC-Raman and GC-FTIR models OpenChrom#346
- Remove MS constraint from the CDK implementation OpenChrom#345
- Quantitation - compensate result OpenChrom#344
- Improvements - Chromatogram Report (*.csv) enhancement OpenChrom#341
- Small maintenance on CDK / OPSIN integration OpenChrom#340
- Add detector/model support for LC-Raman and GC-FTIR ChemClipse#1309
- Classifier (Assign) - add option use best match ChemClipse#1308
- Flip English and German translation for CSD Peak Detector ChemClipse#1307
- Library Collector *.msl ChemClipse#1306
- Add back "Export Table Selection" ChemClipse#1305
- Localized org.eclipse.chemclipse.chromatogram.csd.* ChemClipse#1304
- Peak Filter - add a peak filter to remove unverified targets ChemClipse#1303
- Identification Target - refactor manually verified ChemClipse#1302
- Localized Support UI ChemClipse#1301
- Added a new interface for detector neutral library identification ChemClipse#1300
- Fixed a crash in
.mzML
reading when the sample is not defined. ChemClipse#1274 - Fixed a crash in the time range dialog. ChemClipse#1275
- Fixed a regression where processor quick access toolbar icons were missing. ChemClipse#1277
- Fixed adding header data via UI working. ChemClipse#1296
- Added missing German translation to the charting. SWTChart#339
- Added a button to the Targets view to open the corresponding PubChem entry in a browser. ChemClipse#1298
- Sort the separation column index markers. ChemClipse#1299
- Automatically update edit history when editing Chromatograms. ChemClipse#1297
- Added experimental support for a ChemStation like weighted quadratic regression. ChemClipse#1293
- Added molecule image from Wikidata and PubChem. ChemClipse#1286 ChemClipse#1288 ChemClipse#1290
- Added in-app documentation to the Targets part including hotkeys. ChemClipse#1291
- Added German translation to Peak Integrator Trapezoid. ChemClipse#1281
- Added an option to label targets in the PCA view by both substance name and CAS registry number. ChemClipse#1279
- Added support for sequences of UV-Vis chromatograms in
.AnIML
format and improved compatibility. OpenChrom#339
- First Derivative Settings WSD - fix translation ChemClipse#1273
- HPLC-DAD - create a wavelength remover filter ChemClipse#1272
- Added mzXML metadata and an integration test case ChemClipse#1271
- Compound Quant Editor - the editor crashes ChemClipse#1270
- Add mzData 1.04 and metadata support with integration tests ChemClipse#1269
- Fixed inconsistent language settings ChemClipse#1268
- Removed unrelated entries from the import/export file menu ChemClipse#1267
- File Import/Export contain unrelated entries ChemClipse#1266
- Added a message that changing language requires a restart ChemClipse#1264
- Added read support for mzML metadata ChemClipse#1263
- Added read support for legacy mzML 1.0 ChemClipse#1262
- Open Chromatography Binary - validate peaks on export ChemClipse#1260
- Localized the First Derivative peak detector ChemClipse#1259
- Refactor Retention Index Selector ChemClipse#1258
- Added Drag & Drop to the Chromatogram Batch Editor ChemClipse#1257
- Fixed chromatogram help only working when the chart was clicked prior ChemClipse#1256
- Colors - add color schemes and refactor ChemClipse#1255
- Fixed a resource leak in mass spectrum overlay ChemClipse#1253
- Resource leak when quitting with open MALDI mass spectra ChemClipse#1252
- Added a Pseudo Gel view ChemClipse#1251
- SWT Resource was not properly disposed SWTChart#329
- Series Legend - add an option to keep the original description SWTChart#328
- Series Mapper - add a dynamic option to assign the settings SWTChart#327
- Add Code of Conduct and Notice information SWTChart#326
- Fixed the calculation of the quadratic equation. ChemClipse#1236
- Fixed bad performance of large PCA feature tables. ChemClipse#1238
- Fixed a crash in Chromatogram Peak Chart. ChemClipse#1242
- Fixed a crash when saving as
.ocb
with invalid peaks. ChemClipse#1246 - Fixed a crash when chart labels are empty. SWTChart#325
- Fixed perspective and view switcher showing unlocalized strings ChemClipse##1250
- Added specific types to map GC-IMS, GCxGC etc. OpenChrom#337 ChemClipse#1241
- Added a workaround for the file dialog on Windows not setting the initial directory. ChemClipse#1234
- Peak Detector / Review UI - show/hide peaks OpenChrom#336
- Template Peak Detector - reference based on Retention Index OpenChrom#335
- Template Peak Detector - mixed normal and reference identifier OpenChrom#334
- Quantitation Bundle - refactor bundle name OpenChrom#333
- Rename CDK Identifier Bundle OpenChrom#332
- CSV Report - peak width in minutes instead of milliseconds OpenChrom#331
- Chromatogram Editor - update after executing the process method ChemClipse#1233
- Peak Detector / Review UI - show/hide peaks ChemClipse#1232
- Fixed chromatogram chart using incompatible display types ChemClipse#1231
- ChromatogramSelectionMSD cannot be cast to IChromatogramSelectionWSD ChemClipse#1230
- Fixed unzoom when holding Chromatogram scrollbar with Targets part open ChemClipse#1229
- IPreferenceStore - use setValue instead of putValue ChemClipse#1228
- Quantitation References - validation ChemClipse#1227
- Targets Part - display retention time column correctly ChemClipse#1226
- Localize part of org.eclipse.chemclipse.ux.extension.xxd.ui ChemClipse#1225
- Refactor Series Settings Mapper ChemClipse#1224
- Quantitation Bundle - refactor bundle name ChemClipse#1223
- Generalize - peak quantitation support ChemClipse#1222
- Peak /Scan List - indicate that the width is displayed in minutes ChemClipse#1221
- Chromatogram Scan/Peak Label Editor - add RT & RI ChemClipse#1220
- Flavor Marker Part - show literature in a styled editor ChemClipse#1219
- PCA - indicate creating feature data matrix ChemClipse#1217
- Fixed Axis title font not getting disposed SWTChart#323
- Fixed test charts not getting disposed SWTChart#322
- Series Mapping - handle export dialog modifications SWTChart#321
- Extended Menu - pie charts bulk color / description editing SWTChart#320
- Refactor Series Settings Mapper SWTChart#319
- Compress - fix Null Pointer Exception SWTChart#318
- Harmonize SeparationColumnType and RetentionIndexType OpenChrom#330
- Added an option to label peaks/scans with numbers ChemClipse#1216
- Added back the HTML help viewer ChemClipse#1215
- Updated to Eclipse 2022-12 ChemClipse#1213
- Renamed hidden home folder directory name ChemClipse#1211
- PCA - import sample template ChemClipse#1210
- Update to Eclipse 2022-12 SWTChart#317
- Fixed CircularSeries#getPieSliceFromPosition not using the Y axis position SWTChart#314
- Added an application defined data object associated with each slice SWTChart#313
- Chart Options - static final SWTChart#309
- Make getPixelCoordinate(...) a public method SWTChart#307
- Template Detector / Identifier - allow negative start / stop coordinates OpenChrom#328
- Peak Detector / Review - add a delta retention time to prevent replacing the wrong peak OpenChrom#326
- Peak Detector / Review UI - focus on relevant peaks OpenChrom#325
- Added an .mzMLb integration test OpenChrom#324
- Review isPeakRelevant() method OpenChrom#323
- Added a small .mz5 test case OpenChrom#322
- Fixed .mzDB OpenChrom#321
- Fixed missing execute icon in NMR view OpenChrom#320
- Removed the Chromatogram Overview default chart title ChemClipse#1208
- Chromatogram Statistics Part - add additional values ChemClipse#1207
- Add a chromatogram statistics part ChemClipse#1206
- Chromatogram Target Labels - select the n-highest peaks ChemClipse#1205
- Peak Quantitation List - sort quantitation results ChemClipse#1204
- ChromatogramPeakChart - improve the updatePeaks function ChemClipse#1202
- Improve Basic Peak Models ChemClipse#1201
- Chromatogram Overlay - lock zoom and focus selection ChemClipse#1200
- LibraryField - add options ChemClipse#1199
- GTK ComboViewer Background ChemClipse#1198
- Fixed Feedback view not getting highlighted on error ChemClipse#1197
- Peak/Scan List - delete scan targets is broken ChemClipse#1196
- Time Range Input - enable autocomplete ChemClipse#1195
- Time Range - support user defined labels and initial values ChemClipse#1193
- Chromatogram Filter - select Retention Index by column ChemClipse#1192
- Flavor Marker - add manually verified option ChemClipse#1191
- ILibraryInformation - add index field ChemClipse#1190
- Box Plot SWTChart#306
- Fixed .pkf stream not closing OpenChrom#318
- Crash on Linux OpenChrom#317
- Relabeled the PCA perspective ChemClipse#1189
- Add a Quick Access button ChemClipse#1188
- Fixed no Windows drives but C:\ being shown in the Data Explorer ChemClipse#1187
- Changed Toolbar order ChemClipse#1179
- Harmonize SeparationColumnType and RetentionIndexType ChemClipse#1176
- Fixed broken segment width and window size settings ChemClipse#1173
- Use IonRange instead of int array, add accessor ChemClipse#1170
- Removed separation column enum internal name ChemClipse#1164
- Template Processor - export field editors OpenChrom#314
- Process Entry - add an option to skip validation for label display ChemClipse#1163
- CalibrationMethod - support human friendly names ChemClipse#1162
- Scan Duplicator - avoid retention time shift ChemClipse#1161
- PCA Perspective - add feature data matrix export option ChemClipse#1160
- PCA Perspective - enable feature selection/deselection ChemClipse#1159
- Improve the processor preference page ChemClipse#1158
- Report Settings - show placeholder options ChemClipse#1157
- Updated Orbit to 2022-09 ChemClipse#1156
- Added (.zip) containers ChemClipse#1155
- Buffered Selection - remove label experimental SWTChart#305
- Scan Chart - combo box opaque on Linux/GTK ChemClipse#1154
- Extend the file export and report placeholder ChemClipse#1153
- Export the cheat sheets ChemClipse#1152
- Clipboard - support for image and text data SWTChart#304
- Refactor Compensation Quantifier OpenChrom#307
- Refactor Quant Ratio Classifier OpenChrom#306
- Compensation Quantifier Editor OpenChrom#305
- PCA - display the explained variance ChemClipse#1151
- Added "Cheatsheets" (interactive Tutorials) ChemClipse#1150
- Sequence Support - match file extension ChemClipse#1149
- Dynamic Settings Manager - add sort option ChemClipse#1146
- Time Ranges UI - add select previous/next button ChemClipse#1142
- Fixed the PCA Files tile label ChemClipse#1140
- Refactor assets support ChemClipse#1139
- Renamed Mass Spectrum List ChemClipse#1138
- PCA - create binary file for data exchange ChemClipse#1135
- Allow both upper and lower case for MS database file endings ChemClipse#1134
- PCA - update labels on selection ChemClipse#1131
- Added more dark mode coloring ChemClipse#1132
- PCA - enble variable color support ChemClipse#1128
- Added a table input to the Peak Compensation Quantifier. OpenChrom#304
- Added color handling, sample / feature selection, auto updates, export, label selection to the PCA Editor. ChemClipse#1125, SWTChart#302
- Fixed
.cal
file ending being duplicated ChemClipse#1124
- Fixed saving and filename display of
.animl
chromatograms. OpenChrom#285 - Fixed PCA colors not updating when changing settings. ChemClipse#1113
- Fixed
.cal
file selection not working with upper/lower case in the Calibration Editor ChemClipse#1123 - Fixed Windows and macOS icons at higher resolutions. OpenChrom#299
- Fixed file converters getting chosen for directories. ChemClipse#1112
- Fixed performance for Mass Spectra handling slightly. ChemClipse#1109
- Added settings table for Standards Referencer and Assigner. OpenChrom#300
- Added labels to the Template combo boxes OpenChrom#298
- Added header option and additional fields to the Quantitation Report. ChemClipse#1114
- Added a Retention Index Calculator based on saved settings instead of files. ChemClipse#1121
- Added a German translation of the main menu. ChemClipse#1122
- Added an UI optimized for dark mode. ChemClipse#1118, SWTChart#300
- Added a build optimized for Apple M1.
- Added icons to CSV report and template processors. OpenChrom#296
- Added a tabular input to the template integrator. OpenChrom#295
- Added support for
.btmsp
databases consisting of multiple main spectra projections. OpenChrom#294 - Added a reference identifier column to the Peak Quantitation list. ChemClipse#1111
- Added a delete quantitation references Peak Filter ChemClipse#1110
- Added a title based on user input in the PCA editor ChemClipse#1107
- Added a Scan Duplicator filter to artificially increase the scan density ChemClipse#1104
- Fixed signal value in Scan Chart and Scan Table maxing out at a fixed value ChemClipse#1100
- Fixed diagram reset always selecting the first peak ChemClipse#1106
- Fixed hidden editor toolbars not updating with more than one chromatogram ChemClipse#1105
- Fixed
.animl
saving and filename display. OpenChrom#286 - Added icons to the right-click menu. OpenChrom#287. ChemClipse#1097, ChemClipse#1093, SWTChart#299, SWTChart#296
- Added context-sensitive help. ChemClipse#1099
- Added a right-click menu to the PCR chart. ChemClipse#1094
- Added
*.cal
export for GC-FID. ChemClipse#1092 - Added process methods to the CTRL + 3 command menu. ChemClipse#1089
- Added undo/redo to all filters that delete peaks. ChemClipse#1087
- Added partial German translations. SWTChart#298
- Added user configurable
.csv
and.xlsx
PCR reports. ChemClipse#1086 - Added a gray scale color scheme to Chromatogram Overlay. ChemClipse#1082
- Changed the Peak Detector Template file extension to
*.pdt
OpenChrom#280
- Added an optimal low-resolution MS ion rounding scheme. ChemClipse#1081
- Added undo/redo to Savitzky-Golay smoothing on MSD chromatograms ChemClipse#1079
- Added an option to the Peak Integrator to disallow negative areas. ChemClipse#1078
- Fixed combo box background being transparent on Ubuntu's default Yaru theme. ChemClipse#1080
- Added options to enable a fixed range for the axis in Scan Chart. ChemClipse#1076
- Added an option to sort the trace export from Scan Chart.ChemClipse#1075
- Fixed combo box background being transparent on Ubuntu's default Yaru theme. ChemClipse#1063, ChemClipse#1070
- Added Peak Filter - Activate/Deactivate by Classification ChemClipse#1069, ChemClipse#1067
- Added default
.msl
file extension for Combined Scan Export ChemClipse#1066 - Added support for CAS and Reference ID in Peak Classifier (Assign) ChemClipse#1065
- Fixed Peak Classifier (Assign) failing when case-sensitive is deselected ChemClipse#1064
- Fixed special chars like
;
or|
breaking the Template Processor. OpenChrom#277
- Added a filter to delete peaks by a given quantitation limit. ChemClipse#1062
- Added support for classifying mass spectra from databases. ChemClipse#1061
- Added a tab to switch in the Targets list. ChemClipse#1060
- Removed optional plural forms from UI labels. ChemClipse#1058
- Changed the Named Traces file extension to
*.ntr
ChemClipse#1057 - Changed the Time Ranges file extension to
*.tra
. ChemClipse#1056 - Fixed measurement overlays never disappearing. ChemClipse#1055
- Added functionality to create a combined spectrum from a list of spectra. ChemClipse#1054
- Changed Peak Identifier Template file extension to
*.pit
OpenChrom#275 - Added quantitation for the selected peak to Peak Review UI. OpenChrom#274
- Added manual targets to the Template Review UI. OpenChrom#273
- Changed the Peak Review Template file extension to
*.prt
. OpenChrom#272 - Changed the Time Ratio Classifier file extension to
*.tir
. OpenChrom#271 - Added support for Time Ratio Classifier via process methods. OpenChrom#271
- Added a compiler for peaks and scans in the Time Ratio Classifier. OpenChrom#271
- Changed the Trace Ratio Classifier file extension to
*.trr
. OpenChrom#270 - Added support for Trace Ratio Classifier via process methods. OpenChrom#270
- Added a compiler for peaks and scans in the Trace Ratio Classifier. OpenChrom#270
- Changed Named Traces file extension to
*.ntr
OpenChrom#270 - Changed Time Ranges file extension to
*.tra
OpenChrom#270
- Fixed selected / combined scan buttons being enabled when no chromatogram is loaded. ChemClipse#1052
- Added an option to identify a chromatogram against a Library File (MS) entry. ChemClipse#1053
- Added possibility to create a Combined Scan from chromatogram selection and peaks instead of scans. ChemClipse#1051
- Added an
*.msl
export converter for the Combined Scan part. ChemClipse#1050 - Added a system setting for MSD model preferences. ChemClipse#1049
- Fixed input popup appearing when no chromatogram is set in Time Ranges Chart. ChemClipse#1043
- Fixed PCR editor save as crashing on @KDE. ChemClipse#1040
- Fixed zero values being ignored in the HPLC-DAD ARW converter. ChemClipse#1037
- CSV Report
- Disable the editor when system settings are chosen. OpenChrom#256
- Label the columns to differentiate. OpenChrom#256
- Fixed fields getting skipped when no content is available. OpenChrom#264
- Added peak width fields. OpenChrom#264
- Avoid brackets to create compatible
.csv
OpenChrom#264
- Added Retention Index to Template Processors OpenChrom#253, OpenChrom#254
- Added position adjustments on current selection OpenChrom#255
- Added a chromatogram filter to calculate the RI using information from scans. OpenChrom#258 ChemClipse#1033
- Added an option to define the match quality for transferred peaks. OpenChrom#260
- Added tab, comma, semicolon and whitespace delimiter options to
.xy
ChemClipse#1035 - Added a limit match factor and quality to the SGH-C Classifier. ChemClipse#1032
- Added integration based on HPLC-DAD wavelengths. ChemClipse#1028
- Fixed file saving problems on Linux ChemClipse#1027
- Fixed molecule resize and scaling. ChemClipse#1034
- Added Traces Export Option: Named Traces. ChemClipse#1003
- Added quantitations to
.ocb
exports. ChemClipse#1005 - Added baseline models to
.ocb
exports. ChemClipse#1006 - Added a setting to mark peaks with hidden targets ChemClipse#1008
- Fixed
.mzXML
with namespaces not being read. ChemClipse#1009 - Fixed asking to save chromatograms twice on exit. ChemClipse#1019
- Fixed AMDIS setting being initialized with invalid paths. ChemClipse#1022
- Added parser support for
.cdf
peaks OpenChrom#237 - Added
.gaml
peaks without baseline as identified scans. OpenChrom#242 - Added a streamlined PCR perspective. ChemClipse#984
- Fixed Peak/Scan List scrolling to top upon multi selection ChemClipse#987
- Fixed Time Range Selection modifying time ranges out of selection. ChemClipse#988
- Fixed PCA demo data export and processing ChemClipse#992
- Fixed Console not being displayed in Data Analysis. ChemClipse#993
- Added QuantitationEntry support for n signals. ChemClipse#994
- Added setting pages for scan identifiers in the Scan Chart. ChemClipse#998
- Added read only cell access to selected values. ChemClipse#1000
- Added peak based PCA by retention index. ChemClipse#1001
- Fixed a crash when
.gaml
files contain peak data but no baseline. OpenChrom#228 - Fixed peak table lagging when scrolling with arrow keys ⬇️ ChemClipse#973
- Fixed perspective switcher, asking for a change when switching to current perspective. ChemClipse#970
- Fixed multi selection in Peak/Scan List. ChemClipse#968
- Fixed wizards force closing when double-clicking a file. ChemClipse#967
- Fixed a crash in Scan Comparison. ChemClipse#955
- Fixed a crash in the Scan Table. ChemClipse#940
- Fixed a crash when system settings are saved in the batch process. ChemClipse#933
- Fixed Peak/Scan List not updating when setting new Target Scan by quick access button in Scan Chart. ChemClipse#935
- Fixed welcome screen never disappearing on current macOS. SWTChart#254 OpenChrom#128 ChemClipse#688 OpenChromThirdparty #13 ChemClipse#962 ChemClipse#944 ChemClipse#941
- Added dark mode high DPI compatible icons. OpenChrom#234 ChemClipse#959 ChemClipse#951 ChemClipse#946
- Added a check for missing traces in Peak Review Direct. OpenChrom#221
- Added a new red 🟥 color scheme for task tiles. ChemClipse#971 ChemClipse#726
- Added bigger fonts on macOS ChemClipse#958
see 1.4.0