-
Notifications
You must be signed in to change notification settings - Fork 5
/
CondaQuickBuilder_v2.py
384 lines (320 loc) · 16.6 KB
/
CondaQuickBuilder_v2.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
# Filename: main5.py
# Date: 2024.02.24-2021h
# Docstring needed...
# TODO: add try-except blocks to make all parts of the program fault-tolerant.
#
# Derived from main4.py where Copilot added logging.
# This is the first version of the CondaQuickBuiler with Logging.
import os
import re
import logging
import zipfile
import requests
import datetime
import subprocess
from packaging.version import parse, InvalidVersion
# Set up logging
log_filename = datetime.datetime.now().strftime("%Y%m%d%H%M%S") + "_CondaQuickBuilder_DebugLog.log"
logging.basicConfig(filename=log_filename, level=logging.DEBUG)
print(f"\nLog file '{log_filename}' has been created in: {os.getcwd()}\n") # FOR DEBUGGING
def get_python_cycle_EOL_revision():
"""
get_python_cycle_EOL_revision
Get the latest EOL revision within a Python subversion cycle.
For example: cycle":"3.3","releaseDate":"2012-09-29","support":false,"eol":"2017-09-29","latest":"3.3.7"
Returns:
str: The latest version of Python
"""
latest_python_version = ""
try:
response = requests.get("https://endoflife.date/api/python.json")
response.status_code
parsed_response = response.json()
#parsed_response_text = response.text # if a string is needed, use response.text
logging.info(f"parsed_response {parsed_response}")
latest_python_version = str(parsed_response[0]["latest"])
logging.info(f"latest_python_version {latest_python_version}")
print(f"latest_python_version = {latest_python_version}") # FOR DEBUGGING
return latest_python_version
except Exception as e:
print(f"Error occurred while getting the latest Python version: {e}")
logging.error(f"Error occurred while getting the latest Python version: {e}")
# Define the minimum and maximum acceptable Python versions
MIN_PYTHON_VERSION = 3.6
MAX_PYTHON_VERSION = parse(get_python_cycle_EOL_revision())
def unzip_starter_project_repo():
"""
Unzip a starter project repository.
Returns:
None
"""
try:
# Get the name of the zip file from the user
zip_file_name = input("Enter the name of the zip file: ")
# Create a ZipFile object
with zipfile.ZipFile(zip_file_name, 'r') as zip_ref:
# Extract all the contents of the zip file in the current directory
zip_ref.extractall()
zip_file_name = zip_file_name[:-4]
logging.info(f"Unzipped project repository: {zip_file_name}")
return zip_file_name
except Exception as e:
logging.error(f"Error occurred while unzipping the project repository: {e}")
requirements = []
def parse_requirements(pathtorequirements):
"""
Parse requirements from a requirements file and return a list of tuples containing module, version sign, and version.
:param pathtorequirements: The path to the requirements file
:type pathtorequirements: str
:return: A list of tuples containing module, version sign, and version
:rtype: list
"""
global requirements
try:
with open(f'{pathtorequirements}/requirements.txt', 'r') as file:
for line in file:
line = line.strip()
if line and not line.startswith('#'): # ignore empty lines and comments
match = re.match(r'([a-zA-Z0-9_.-]+\[?[a-zA-Z0-9_.-]*\]?)([<=>]+)?([\d.a-zA-Z-]*)?', line)
if match:
module, version_sign, version = match.groups()
requirements.append((module, version_sign, version))
else:
# handle packages without version specification
requirements.append((line, None, None))
except Exception as e:
logging.error(f"Error occurred while parsing the requirements.txt file: {e}")
def get_envs():
"""
Function to retrieve a list of available pre-existing conda environments.
Returns a list of environment names.
"""
try:
result = subprocess.run(['conda', 'env', 'list'], stdout=subprocess.PIPE)
envs = result.stdout.decode('utf-8').splitlines()
env_names = [line.split()[0] for line in envs if not line.startswith('#') and line.split()]
return env_names
except Exception as e:
logging.error(f"Error occurred while using get_envs() while to retrieve a list of all existing conda environments: {e}")
def get_channels():
"""
Retrieves a list of channels from the conda configuration.
Returns a list of channel names.
"""
try:
result = subprocess.run(['conda', 'config', '--show', 'channels'], stdout=subprocess.PIPE)
# Decode the output to a string and split into lines
channels_output = result.stdout.decode('utf-8').splitlines()
# Initialize an empty list to hold channel names
channels_names = []
# Iterate through each line in the output
for line in channels_output:
# Check if the line starts with " - " which indicates a channel name
if line.strip().startswith('-'):
# Split the line by spaces and take the last element as the channel name
channel_name = line.split()[-1]
# Append the channel name to the list
channels_names.append(channel_name)
return channels_names
except Exception as e:
logging.error(f"Error occurred while retrieving conda channels using get_channels(): {e}")
def get_package_versions(env, package):
"""
Retrieves the version of a specified package in a given environment using conda.
# TODO: should this function be called get_package_version() or get_package_version_in_env()?
Args:
env (str): The name of the conda environment.
package (str): The name of the package.
Returns:
str: A string containing the version of the specified package in the given environment.
"""
try:
result = subprocess.run(['conda', 'list', '-n', env, package], stdout=subprocess.PIPE)
print(f"The Result of subprocess assigned to 'result' is: {result}") # FOR DEBUGGING
logging.info(f"Result of subprocess: {result}")
versions = result.stdout.decode('utf-8')
print(f"The result assigned to 'versions' is: {versions}") # FOR DEBUGGING
logging.info(f"Decoded versions: {versions}")
return versions
except Exception as e:
logging.error(f"Error occurred while retrieving package version using get_package_versions() function: {e}")
def save_versions(package):
"""
Save the package version if it exists in an environment to a file.
TODO: clarify the exact purpose(s) of this function.
Save versions of a package for all environments to a file.
TODO: Change "conda_versions_all_envs.txt" to a variable or parameter.
Args:
package: The package for which versions are to be saved.
Returns:
None
"""
try:
envs = get_envs()
with open('conda_versions_all_envs.txt', 'w') as f:
for env in envs:
f.write(f'Environment: {env}\n')
f.write(get_package_versions(env, package))
f.write('\n')
print(f"Versions of package {package} saved to conda_versions_all_envs.txt") # FOR DEBUGGING
except Exception as e:
logging.error(f"Error occurred while saving versions using save_versions(package): {e}")
def create_conda_env(env_name, python_version):
"""
Create a new conda environment.
Parameters:
env_name (str): The name of the conda environment.
Returns:
None
"""
try:
# Create a new conda environment
subprocess.run(["conda", "create", "--name", env_name, "python={python_version}" ,"--yes"], check=True)
subprocess.run(["conda", "install", "-n", env_name, "pip","--yes"], check=True)
except Exception as e:
logging.error(f"Error occurred while creating conda environment using create_conda_env(env_name, python_version): {e}")
def search_pypi(package, package_sign, package_version):
"""
Searches PyPI for a package and filters the releases based on the given version sign and version number.
Returns the highest version that matches the criteria. Supports wildcard '*' in package_version for matching any minor/patch version.
Args:
package (str): The name of the package to search for.
package_sign (str): The comparison operator ("==", "<=", or "~=").
package_version (str): The version number to compare against, supports wildcard '*' for minor/patch versions.
Returns:
str: The highest version number that matches the given criteria or None if no matches found.
"""
try:
url = f"https://pypi.org/pypi/{package}/json"
response = requests.get(url)
if response.status_code == 200:
data = response.json()
releases = data.get("releases", {})
valid_versions = []
for release in releases:
try:
release_ver = parse(release)
if '*' in package_version:
base_version = package_version.rstrip('*')
if str(release).startswith(base_version):
valid_versions.append(release_ver)
else:
if package_sign == "==":
if release_ver == parse(package_version):
valid_versions.append(release_ver)
elif package_sign == "<=":
if release_ver <= parse(package_version):
valid_versions.append(release_ver)
elif package_sign == "~=":
if release_ver.major == parse(package_version).major and release_ver >= parse(package_version):
valid_versions.append(release_ver)
except InvalidVersion:
continue
if valid_versions:
# Find the highest version from the valid_versions list
highest_version = max(valid_versions)
return str(highest_version)
return None
except Exception as e:
logging.error(f"Error occurred while searching PyPI: {e}")
# TODO: split the steps in search_package into separate functions?
# TODO: add try-except blocks to make this fault-tolerant.
def search_package(package, package_sign, package_version, channels_list):
"""
Search for a package in Conda Forge, Anaconda, and PIP repositories.
Parameters:
package (str): The name of the package.
Returns:
str: The repository where the package was found, or None if it wasn't found.
"""
global conda_packages, pip_packages
# Loop through the channels
for channel in channels_list:
if channel == "defaults":
channel = "anaconda"
result = subprocess.run(["conda", "search", "-c", channel, f"{package}{package_sign}{package_version}"], stdout=subprocess.PIPE)
if package in result.stdout.decode():
# Install conda package in the environment
conda_install_cmd = ["conda", "install", "--yes", "--name", env_name, "-c", channel, f"{package}{package_sign}{package_version}"]
print(f'Try to install {conda_install_cmd}')
subprocess.run(conda_install_cmd, check=True)
print (f"Package '{package} {package_version}' found in '{channel}' channel. And installed in environment '{env_name}'")
return channel
# Search in PIP
version = search_pypi(package, package_sign, package_version)
if version:
pip_packages_versions = f"{package}={version} "
# Install pip packages
# using this version "conda run -n ETC_tools python -m pip install pandas==1.3.5"
print(f'Try to install {pip_packages_versions}')
subprocess.run(["conda", "run", "-n", env_name, "python", "-m", "pip", "install", pip_packages_versions], check=True)
print (f"Package '{package} {package_version}' found in 'PyPI' channel. And installed in environment '{env_name}'")
return version
print(f"Package '{package} {package_version}' not found in any channel.")
return None
# TODO: make main() into a separate function that is the main "entry point" for the program.
# TODO: After each step, add a log message to indicate that the step has been completed successfully.
if __name__ == "__main__":
# unzip and get project folder name
project_folder_name = unzip_starter_project_repo()
try:
while True:
# TODO: ask the user if they want to use the latest Python version or if not, which earlier version they want to use.
python_version = input("Enter Python version for environment (e.g., 3.7.4): ")
def validate_python_version(python_version):
# Check if the entered version matches a valid revision for a Python subversion within a specific release cycle
if re.match(r'^\d+\.\d+(\.\d+)?$', python_version):
parsed_version = parse(python_version)
# Check if the version is within the acceptable range
if MIN_PYTHON_VERSION <= parsed_version <= MAX_PYTHON_VERSION:
print(f"You have entered Valid Python version: {python_version}\n")
return True # Version is valid
else:
print(f"Python version {python_version} is out of the acceptable range ({MIN_PYTHON_VERSION} - {MAX_PYTHON_VERSION}).")
else:
print("Invalid format. Please enter a valid Python version (e.g., '3.7.4').")
return False
validate_python_version(python_version)
# # Check if the entered version matches a valid revision for a Python subversion within a specific release cycle
# if re.match(r'^\d+\.\d+(\.\d+)?$', python_version):
# parsed_version = parse(python_version)
# # Check if the version is within the acceptable range
# if MIN_PYTHON_VERSION <= parsed_version <= MAX_PYTHON_VERSION:
# print(f"You have entered Valid Python version: {python_version}\n")
# break # Version is valid; exit the loop
# else:
# print(f"Python version {python_version} is out of the acceptable range ({MIN_PYTHON_VERSION} - {MAX_PYTHON_VERSION}).")
# else:
# print("Invalid format. Please enter a valid Python version (e.g., '3.7.4').")
# parse requirements
parse_requirements(project_folder_name)
# get channels_list returned from get_channels()
channels_list = get_channels()
envs_list = get_envs()
env_name = ""
while True:
env_name = input("Enter your NEW Environment Name: ")
if env_name not in envs_list:
create_conda_env(str(env_name), python_version)
print(f"Environment '{env_name}' has been created.")
break # Exit the loop
else:
print(f"Environment '{env_name}' already exists. Please enter a different environment name.")
if requirements:
for requirement in requirements:
package = requirement[0]
package_sign = requirement[1]
package_version = requirement[2]
search_package(package, package_sign, package_version, channels_list)
print(f"Package '{package} {package_version}' installed in environment '{env_name}'") # FOR DEBUGGING
except Exception as e:
logging.error(f"Error occurred in main: {e}")
# Save versions of a package for all environments to a file
save_versions(package)
logging.info(f"Versions of package {package} saved to conda_versions_all_envs.txt in {os.getcwd()}")
print(f"Versions of package {package} saved to conda_versions_all_envs.txt")
# print(f"Environment {env_name} created successfully with Python version {python_version}")
# logging.info(f"Environment {env_name} created successfully with Python version {python_version}")
# print(f"Package {package} installed successfully in environment {env_name}")
# logging.info(f"Package {package} installed successfully in environment {env_name}")
# print(f"Versions of package {package} saved to conda_versions_all_envs.txt")