This repository holds code to demo how to run a connectivity analysis pipeline using EBRAINS and Nilearn.
- Python >= 3.6
- Nilearn >= 0.8.0
- Siibra >= 0.2a51
Nilearn is a Python package providing statistical and machine-learning tools to enable analyses of brain volumes.
Install Nilearn from Pypi:
$ pip install nilearn
The documentation is available here.
The sources are available on GitHub here.
Siibra is a Python client for interacting with “multilevel” brain atlases, which combine multiple brain parcellations, reference coordinate spaces and modalities.
Install siibra from Pypi:
$ pip install siibra
The documentation is available here.
The sources are available on Github here.
Make sure you have the requirements installed and run the following notebook.
For any question you can contact Nicolas Gensollen at [email protected].