diff --git a/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp b/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp index ee21ef822..e60c13751 100644 --- a/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp +++ b/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp @@ -156,6 +156,7 @@ class BevertonHoltRecruitmentInterface : public RecruitmentInterfaceBase { info->RegisterParameter(recruitment->log_recruit_devs[i]); } } else { + recruitment->estimate_log_recruit_devs = estimate_log_devs; for (size_t i = 0; i < recruitment->log_recruit_devs.size(); i++) { recruitment->log_recruit_devs[i] = this->log_devs[i]; } diff --git a/vignettes/fims-demo.Rmd b/vignettes/fims-demo.Rmd index 0617a2032..54c4643c5 100644 --- a/vignettes/fims-demo.Rmd +++ b/vignettes/fims-demo.Rmd @@ -332,6 +332,11 @@ sdr_fixed <- summary(sdr, "fixed") report <- obj$report() print(sdr_fixed) + +#report out nll components +report$rec_nll #recruitment +report$index_nll #fishery catch and survey index +report$age_comp_nll #fishery and survey age composition ```