diff --git a/resources/nfdi4bioimage.yml b/resources/nfdi4bioimage.yml index ad0ffb13..ebfb48c4 100644 --- a/resources/nfdi4bioimage.yml +++ b/resources/nfdi4bioimage.yml @@ -9339,4 +9339,129 @@ resources: url: - https://zenodo.org/records/14510432 - https://doi.org/10.5281/zenodo.14510432 - + +- authors: Rafael Irizarry + description: UMAP is a powerful tool for exploratory data analysis, but without a clear understanding of how it works, it can easily lead to confusion and misinterpretation. + license: UNKNOWN + name: Biologists, stop putting UMAP plots in your papers + publication_date: '2024-12-23' + tags: + - Biology + - Data Analysis + - UMAP + type: + - Blog Post + url: https://simplystatistics.org/posts/2024-12-23-biologists-stop-including-umap-plots-in-your-papers/ + +- authors: Joachim Goedhart + license: CC BY-NC-SA 4.0 + name: DataViz protocols - An introduction to data visualization protocols for wet lab scientists + publication_date: '2024-12-10' + tags: + - Data Visualization + - R + type: + - Book + url: + - https://zenodo.org/records/7257808 + - https://joachimgoedhart.github.io/DataViz-protocols/ + +- authors: Joachim Goedhart + description: The author discusses a number of color palettes that are suitable for coloring graphical elements in plots. + license: UNKNOWN + name: Data Visualization with Flying Colors + publication_date: '2019-08-29' + tags: + - Data Visualization + type: + - Blog Post + url: https://thenode.biologists.com/data-visualization-with-flying-colors/research/ + +- authors: + - Riccardo Massei + - Björn Grüning + license: CC-BY-4.0 + name: Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy + publication_date: '2024-12-02' + tags: + - OMERO + - Galaxy + - Metadata + type: + - Tutorial + - Framework + - Workflow + url: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/omero-suite/tutorial.html + +- authors: Iván Hidalgo-Cenalmor + license: UNKNOWN + name: DL4MicEverywhere – Overcoming reproducibility challenges in deep learning microscopy imaging + publication_date: '2024-07-29' + tags: + - Deep Learning + - Microscopy + - Microsycopy Image Analysis + - Bio Image Analysis + - Artifical Intelligence + type: + - Blog Post + url: https://focalplane.biologists.com/2024/07/29/dl4miceverywhere-overcoming-reproducibility-challenges-in-deep-learning-microscopy-imaging/ + +- authors: UNKNOWN + license: UNKNOWN + name: New report highlights the scientific impact of open source software + publication_date: UNKNOWN + tags: + - Open Source + - AlphaFold + type: + - Report + - Blog Post + url: https://www.statnews.com/sponsor/2024/11/26/new-report-highlights-the-scientific-impact-of-open-source-software/ + +- authors: + - Leonid Kostrykin + - Diana Chiang Jurado + license: cc-by-4.0 + name: Tracking of mitochondria and capturing mitoflashes + publication_date: '2024-11-20' + tags: + - Bioinformatics + - Bioimage Analysis + type: + - Workflow + - Tutorial + url: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html#tracking-of-mitochondria-and-capturing-mitoflashes + +- authors: + - Virginie Uhlmann + - Matthew Hartley + - Josh Moore + - Erin Weisbart + - Assaf Zaritsky + license: cc-by-4.0 + name: Making the most of bioimaging data through interdisciplinary interactions + publication_date: '2024-10-23' + tags: + - Bioimage Analysis + - Open Science + - Microscopy Image Analysis + - Microscopy + type: + - Publication + url: https://journals.biologists.com/jcs/article/137/20/jcs262139/362478/Making-the-most-of-bioimaging-data-through + +- authors: + - Jakob Nikolas Kather + - Faisal Mahmood + - Florian Jug + description: How can artificial intelligence be used for digital pathology? + license: UNKNOWN + name: Artificial Intelligence for Digital Pathology + publication_date: '2024-11-08' + tags: + - Artificial Intelligence + type: + - Youtube Video + url: https://www.youtube.com/watch?v=Om9tl4Dh2yw +