Query Parameters

[averagehat]

I remember some discussion of default query parameters we should use for querying. I remember there was one in particular that was almost required for Seqr but that information seems to be lost. I want to make sure results/sensitivity are correct to compare with blastx.

[lianyi]

Right, we'd need to fill that in. What's the current parameter being used ( I don't have a computer to access until later today ) ?

Simply & DRY

-----Original Message-----
From: Mike Panciera [[email protected]:[email protected]]
Sent: Monday, September 14, 2015 12:50 PM Eastern Standard Time
To: NCBI-Hackathons/seqr
Subject: [seqr] Query Parameters (#42)

I remember some discussion of default query parameters we should use for querying. I remember there was one in particular that was almost required for Seqr but that information seems to be lost. I want to make sure results/sensitivity are correct to compare with blastx.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/42.

[averagehat]

Right now it's just "sequence:" and nothing else

[lianyi]

Perhaps we can add mm ( minimum should match) = 50% for now . The smaller value will include more distant homologous but possible more false positives.

We can also add another flavor : tanimoto score ( will send in another update on this soon), that might better rank the hits.

Simply & DRY

-----Original Message-----
From: Mike Panciera [[email protected]:[email protected]]
Sent: Monday, September 14, 2015 02:23 PM Eastern Standard Time
To: NCBI-Hackathons/seqr
Cc: Han, Lianyi (NIH/NLM/NCBI) [C]
Subject: Re: [seqr] Query Parameters (#42)

Right now it's just "sequence:" and nothing else

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/42#issuecomment-140166164.