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Commandline Options #22

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averagehat opened this issue Aug 14, 2015 · 0 comments
Open

Commandline Options #22

averagehat opened this issue Aug 14, 2015 · 0 comments

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@averagehat
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We want to support many of the options blast does, but some are not applicable.
@pcantalupo requested

-num_threads
-outfmt 6 std with these additional specifiers: qcovs, qcovhsp, qlen, slen
-show_gis
-evalue
-lcase_masking
-max_target_seqs
-word_size
-perc_identity

I don't think evalue or word_size translate to Seqr. I'm sure how lcase_masking will be done but I'm sure it's possible.
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@averagehat