pyproject.toml

[tool.poetry]
name = "2024-team-landrum-song"
version = "0.1.0"
description = "Naming for human genetic diseases is complex. Diseases may be named for the phenotype; other information may be alluded to including the relevant gene, mode of inheritance, or the mechanism of disease. Diseases may be described at a high level with a generic name, or at a lower level with a more specific name; however, in the context of a variant in a specific gene, these differences may not be considered important. ClinVar data would be easier to ingest in bulk and to read in web displays if there were a meaningful way to aggregate diseases that effectively mean the same thing in the context of a gene."
authors = ["Nicholas Minor <nrminor@wisc.edu>"]
license = "MIT"
readme = "README.md"

[tool.poetry.dependencies]
python = ">=3.10,<3.13"
pandas = "^2.2.1"
polars = "^0.20.11"
biopython = "^1.83"
rich = "^13.7.0"
flytekit = "^1.10.7"
lxml = "^5.1.0"
llm = "^0.13.1"
nextflow = "^23.10.1"


[tool.poetry.group.dev.dependencies]
ruff = "^0.2.2"
jupyter = "^1.0.0"
marimo = "^0.2.8"
quarto = "^0.1.0"
ipykernel = "^6.29.3"
pdoc = "^14.4.0"
pre-commit = "^3.6.2"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"